RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 TMEM200BQ69YZ2 307 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 PLBD1Q6P4A8 553 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 C10orf99Q6UWK7 81 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 C8orf86Q6ZUL3 223 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 C16orf82Q7Z2V1 217 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.84□□□□□ -0.99
VPS53-207ENST00000570510 KLHL30-AS1Q8NEE0 82 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 CSNK2A3Q8NEV1 391 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 OR6N2Q8NGY6 317 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 REEP6Q96HR9 211 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 HRASLS5Q96KN8 279 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 HIST1H2AAQ96QV6 131 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 ABHD6Q9BV23 337 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 OR51V1Q9H2C8 321 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 CENPMQ9NSP4 180 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 TVP23BQ9NYZ1 205 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 A0A0U1RQV5 110 aa8.83□□□□□ -1
VPS53-207ENST00000570510 TVP23AA6NH52 213 aa8.83□□□□□ -1
VPS53-207ENST00000570510 FAM183AA6NL82 134 aa8.83□□□□□ -1
VPS53-207ENST00000570510 TMEM210A6NLX4 147 aa8.83□□□□□ -1
VPS53-207ENST00000570510 H3BNX3 289 aa8.83□□□□□ -1
VPS53-207ENST00000570510 CCL3L1P16619 93 aa8.83□□□□□ -1
VPS53-207ENST00000570510 LUMP51884 338 aaPredicted RBP8.83□□□□□ -1
VPS53-207ENST00000570510 ARHGDIBP52566 201 aa8.83□□□□□ -1
VPS53-207ENST00000570510 RPL23AP62750 156 aaKnown RBP8.83□□□□□ -1
VPS53-207ENST00000570510 IL18R1Q13478 541 aa8.83□□□□□ -1
VPS53-207ENST00000570510 EIF2B1Q14232 305 aaKnown RBP8.83□□□□□ -1
VPS53-207ENST00000570510 ETV3LQ6ZN32 361 aa8.83□□□□□ -1
VPS53-207ENST00000570510 THAP5Q7Z6K1 395 aa8.83□□□□□ -1
VPS53-207ENST00000570510 AMIGO2Q86SJ2 522 aa8.83□□□□□ -1
VPS53-207ENST00000570510 ERI1Q8IV48 349 aaKnown RBP8.83□□□□□ -1
VPS53-207ENST00000570510 OSR2Q8N2R0 312 aa8.83□□□□□ -1
VPS53-207ENST00000570510 IQCF1Q8N6M8 205 aa8.83□□□□□ -1
VPS53-207ENST00000570510 CCDC54Q8NEL0 328 aa8.83□□□□□ -1
VPS53-207ENST00000570510 OR51L1Q8NGJ5 315 aa8.83□□□□□ -1
VPS53-207ENST00000570510 ZNRF4Q8WWF5 429 aa8.83□□□□□ -1
VPS53-207ENST00000570510 ISOC1Q96CN7 298 aa8.83□□□□□ -1
VPS53-207ENST00000570510 RNF170Q96K19 258 aa8.83□□□□□ -1
VPS53-207ENST00000570510 LYZL4Q96KX0 146 aa8.83□□□□□ -1
VPS53-207ENST00000570510 CIB1Q99828 191 aa8.83□□□□□ -1
VPS53-207ENST00000570510 MROQ9BYG7 248 aa8.83□□□□□ -1
VPS53-207ENST00000570510 TLNRD1Q9H1K6 362 aa8.83□□□□□ -1
VPS53-207ENST00000570510 OR10A2Q9H208 303 aa8.83□□□□□ -1
VPS53-207ENST00000570510 MOB1AQ9H8S9 216 aa8.83□□□□□ -1
VPS53-207ENST00000570510 S100A14Q9HCY8 104 aa8.83□□□□□ -1
VPS53-207ENST00000570510 LAMP5Q9UJQ1 280 aa8.83□□□□□ -1
VPS53-207ENST00000570510 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.83□□□□□ -1
VPS53-207ENST00000570510 IGKV1D-17A0A075B6S4 117 aa8.82□□□□□ -1
VPS53-207ENST00000570510 RBMY1BA6NDE4 496 aaKnown RBP8.82□□□□□ -1
VPS53-207ENST00000570510 RBMY1EA6NEQ0 496 aaKnown RBP8.82□□□□□ -1
VPS53-207ENST00000570510 DHRS7CA6NNS2 312 aa8.82□□□□□ -1
VPS53-207ENST00000570510 GYPBP06028 91 aa8.82□□□□□ -1
VPS53-207ENST00000570510 H2BFMP0C1H6 154 aa8.82□□□□□ -1
VPS53-207ENST00000570510 RBMY1DP0C7P1 496 aaKnown RBP8.82□□□□□ -1
VPS53-207ENST00000570510 CLUP10909 449 aa8.82□□□□□ -1
VPS53-207ENST00000570510 PSG2P11465 335 aa8.82□□□□□ -1
VPS53-207ENST00000570510 PIPP12273 146 aaPredicted RBP8.82□□□□□ -1
VPS53-207ENST00000570510 HTR1FP30939 366 aa8.82□□□□□ -1
VPS53-207ENST00000570510 BRS3P32247 399 aa8.82□□□□□ -1
VPS53-207ENST00000570510 RPS7P62081 194 aaKnown RBP8.82□□□□□ -1
VPS53-207ENST00000570510 SNRPGP62308 76 aaKnown RBP8.82□□□□□ -1
VPS53-207ENST00000570510 FAM3AP98173 230 aa8.82□□□□□ -1
VPS53-207ENST00000570510 APOFQ13790 326 aa8.82□□□□□ -1
VPS53-207ENST00000570510 KLHL12Q53G59 568 aa8.82□□□□□ -1
VPS53-207ENST00000570510 PRSS45Q7RTY3 260 aa8.82□□□□□ -1
VPS53-207ENST00000570510 OR2W3Q7Z3T1 314 aa8.82□□□□□ -1
VPS53-207ENST00000570510 KCTD20Q7Z5Y7 419 aa8.82□□□□□ -1
VPS53-207ENST00000570510 ZNF329Q86UD4 541 aa8.82□□□□□ -1
VPS53-207ENST00000570510 CALHM1Q8IU99 346 aa8.82□□□□□ -1
VPS53-207ENST00000570510 SBSPONQ8IVN8 264 aa8.82□□□□□ -1
VPS53-207ENST00000570510 ZNF679Q8IYX0 411 aa8.82□□□□□ -1
VPS53-207ENST00000570510 PQLC1Q8N2U9 271 aa8.82□□□□□ -1
VPS53-207ENST00000570510 OR5M8Q8NGP6 311 aa8.82□□□□□ -1
VPS53-207ENST00000570510 ZNF671Q8TAW3 534 aa8.82□□□□□ -1
VPS53-207ENST00000570510 HAVCR2Q8TDQ0 301 aa8.82□□□□□ -1
VPS53-207ENST00000570510 PYDC1Q8WXC3 89 aa8.82□□□□□ -1
VPS53-207ENST00000570510 OTULINQ96BN8 352 aa8.82□□□□□ -1
VPS53-207ENST00000570510 CITED4Q96RK1 184 aa8.82□□□□□ -1
VPS53-207ENST00000570510 CNN2Q99439 309 aaKnown RBP8.82□□□□□ -1
VPS53-207ENST00000570510 SLC25A33Q9BSK2 321 aa8.82□□□□□ -1
VPS53-207ENST00000570510 LIN7BQ9HAP6 207 aa8.82□□□□□ -1
VPS53-207ENST00000570510 ZFP57Q9NU63 452 aa8.82□□□□□ -1
VPS53-207ENST00000570510 CLN6Q9NWW5 311 aa8.82□□□□□ -1
VPS53-207ENST00000570510 ZNF256Q9Y2P7 627 aaPredicted RBP8.82□□□□□ -1
VPS53-207ENST00000570510 RHBDD3Q9Y3P4 386 aa8.82□□□□□ -1
VPS53-207ENST00000570510 MPC1Q9Y5U8 109 aa8.82□□□□□ -1
VPS53-207ENST00000570510 SACSQ9NZJ4 4579 aa8.82□□□□□ -1
VPS53-207ENST00000570510 LYSTQ99698 3801 aa8.82□□□□□ -1
VPS53-207ENST00000570510 ZNF850A8MQ14 1090 aa8.81□□□□□ -1
VPS53-207ENST00000570510 PRKYO43930 277 aa8.81□□□□□ -1
VPS53-207ENST00000570510 SULT1C4O75897 302 aa8.81□□□□□ -1
VPS53-207ENST00000570510 OR2T7P0C7T2 308 aa8.81□□□□□ -1
VPS53-207ENST00000570510 PGA5P0DJD9 388 aa8.81□□□□□ -1
VPS53-207ENST00000570510 JUNBP17275 347 aaPredicted RBP8.81□□□□□ -1
VPS53-207ENST00000570510 RPS27P42677 84 aaKnown RBP8.81□□□□□ -1
VPS53-207ENST00000570510 CX3CR1P49238 355 aa8.81□□□□□ -1
VPS53-207ENST00000570510 GSK3AP49840 483 aa8.81□□□□□ -1
VPS53-207ENST00000570510 PSMA6P60900 246 aaKnown RBP8.81□□□□□ -1
VPS53-207ENST00000570510 GABPB1Q06547 395 aaPredicted RBP8.81□□□□□ -1
VPS53-207ENST00000570510 ZSCAN26Q16670 478 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms