RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 SLC35F2Q8IXU6 374 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 OR13D1Q8NGV5 346 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 WIPF2Q8TF74 440 aaPredicted RBP12.05□□□□□ -0.48
CLN3-236ENST00000568558 MNTQ99583 582 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 ADGRL4Q9HBW9 690 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.05□□□□□ -0.48
CLN3-236ENST00000568558 SNX5Q9Y5X3 404 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 ZAR1LA6NP61 321 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 ZNF737O75373 536 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 ZNF728P0DKX0 622 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 CD28P10747 220 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 CCL1P22362 96 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 CNN3Q15417 329 aaKnown RBP12.04□□□□□ -0.48
CLN3-236ENST00000568558 NSUN5P1Q3KNT7 163 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 SLX4IPQ5VYV7 408 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 C12orf73Q69YU5 71 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 REC114Q7Z4M0 266 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 TMEM219Q86XT9 240 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 ASCC1Q8N9N2 400 aaKnown RBP12.04□□□□□ -0.48
CLN3-236ENST00000568558 OR11H6Q8NGC7 330 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 TRMT10AQ8TBZ6 339 aaKnown RBP12.04□□□□□ -0.48
CLN3-236ENST00000568558 RPS4Y2Q8TD47 263 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 MALSU1Q96EH3 234 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 OSBPL10Q9BXB5 764 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 PRRG3Q9BZD7 231 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 ABCB10Q9NRK6 738 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 MRM2Q9UI43 246 aaKnown RBP12.04□□□□□ -0.48
CLN3-236ENST00000568558 PITPNC1Q9UKF7 332 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 SLC22A13Q9Y226 551 aa12.04□□□□□ -0.48
CLN3-236ENST00000568558 MEX3AA1L020 520 aaKnown RBP12.03□□□□□ -0.48
CLN3-236ENST00000568558 ADARB2-AS1A8MUL3 147 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 ZNF670-ZNF695F2Z2N8 137 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 XPNPEP2O43895 674 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 CHRM2P08172 466 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 IGHV1-8P0DP01 117 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 EDDM3BP56851 147 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 EFNB1P98172 346 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 EMX1Q04741 257 aaPredicted RBP12.03□□□□□ -0.48
CLN3-236ENST00000568558 SSX2Q16385 188 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 OXLD1Q5BKU9 147 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 AADACL4Q5VUY2 407 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 NXNL2Q5VZ03 156 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 ZFP1Q6P2D0 407 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 TCF23Q7RTU1 214 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 TCEANCQ8N8B7 351 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 OR4S1Q8NGB4 309 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 PRSS22Q9GZN4 317 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 WNT10AQ9GZT5 417 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 MMP28Q9H239 520 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 S100A14Q9HCY8 104 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 CLN6Q9NWW5 311 aa12.03□□□□□ -0.48
CLN3-236ENST00000568558 FAM230AA0A1W2PPH8 454 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 F8VVB4 439 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 F8VWA3 439 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 PIN1P1O15428 100 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 DYNLT3P51808 116 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 GDPD3Q7L5L3 318 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 NDUFA11Q86Y39 141 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 OR8H2Q8N162 312 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 TMEM163Q8TC26 289 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 R3HDM4Q96D70 268 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 CEP19Q96LK0 163 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 ZNF714Q96N38 554 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 IL4I1Q96RQ9 567 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 CITED2Q99967 270 aaPredicted RBP12.02□□□□□ -0.49
CLN3-236ENST00000568558 GABARAPL3Q9BY60 117 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 RIBC2Q9H4K1 309 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 PLEKHA1Q9HB21 404 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 MTCH1Q9NZJ7 389 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 H2AFY2Q9P0M6 372 aaPredicted RBP12.02□□□□□ -0.49
CLN3-236ENST00000568558 SLC7A11Q9UPY5 501 aa12.02□□□□□ -0.49
CLN3-236ENST00000568558 KIAA2026Q5HYC2 2103 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 IGKV1-27A0A075B6S5 117 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 TMEM82A0PJX8 343 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 EI24O14681 340 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 RPP14O95059 124 aaKnown RBP12.01□□□□□ -0.49
CLN3-236ENST00000568558 ALPLP05186 524 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 MEF2CQ06413 473 aaPredicted RBP12.01□□□□□ -0.49
CLN3-236ENST00000568558 DYNC1I2Q13409 638 aaKnown RBP12.01□□□□□ -0.49
CLN3-236ENST00000568558 UBE2V2Q15819 145 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 ODF4Q2M2E3 257 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 Q6ZS46 218 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 SSX6Q7RTT6 188 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 CATSPERDQ86XM0 798 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 GID4Q8IVV7 300 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 OR4F17Q8NGA8 305 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 SLAMF9Q96A28 289 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 SNX22Q96L94 193 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 OR4F4Q96R69 305 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 ZNF281Q9Y2X9 895 aa12.01□□□□□ -0.49
CLN3-236ENST00000568558 ANKRD65E5RJM6 399 aa12□□□□□ -0.49
CLN3-236ENST00000568558 H3BSH0 61 aa12□□□□□ -0.49
CLN3-236ENST00000568558 F2RL2O00254 374 aa12□□□□□ -0.49
CLN3-236ENST00000568558 SYT7O43581 403 aa12□□□□□ -0.49
CLN3-236ENST00000568558 GATBO75879 557 aaKnown RBP12□□□□□ -0.49
CLN3-236ENST00000568558 KRT8P05787 483 aa12□□□□□ -0.49
CLN3-236ENST00000568558 JUNBP17275 347 aaPredicted RBP12□□□□□ -0.49
CLN3-236ENST00000568558 FUT6P51993 359 aa12□□□□□ -0.49
CLN3-236ENST00000568558 OR12D2P58182 307 aa12□□□□□ -0.49
CLN3-236ENST00000568558 ACTA2P62736 377 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms