RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 GPX5O75715 221 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 GATBO75879 557 aaKnown RBP7.6□□□□□ -1.19
VPS35-206ENST00000565228 KDM4BO94953 1096 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 ALX3O95076 343 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 CD1AP06126 327 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 RPSAP08865 295 aaKnown RBP7.6□□□□□ -1.19
VPS35-206ENST00000565228 OCM2P0CE71 109 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 ZNF20P17024 532 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 HSPA13P48723 471 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 RBP2P50120 134 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 SNU13P55769 128 aaKnown RBP7.6□□□□□ -1.19
VPS35-206ENST00000565228 EMX1Q04741 257 aaPredicted RBP7.6□□□□□ -1.19
VPS35-206ENST00000565228 TPBGQ13641 420 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 MED22Q15528 200 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 KISS1Q15726 138 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 MICBQ29980 383 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 ESCO2Q56NI9 601 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 RBM48Q5RL73 367 aaKnown RBP7.6□□□□□ -1.19
VPS35-206ENST00000565228 LIPKQ5VXJ0 399 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 Q6P435 159 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 C17orf107Q6ZR85 190 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 BTN2A1Q7KYR7 527 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 LRRTM1Q86UE6 522 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 C11orf42Q8N5U0 333 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 Q8N7P7 452 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 OR10K1Q8NGX5 313 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 ZNF671Q8TAW3 534 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 GPR148Q8TDV2 347 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 MYDGFQ969H8 173 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 SPSB1Q96BD6 273 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 TMIGD2Q96BF3 282 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 C12orf43Q96C57 262 aaKnown RBP7.6□□□□□ -1.19
VPS35-206ENST00000565228 SDSLQ96GA7 329 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 ZNF48Q96MX3 618 aaPredicted RBP7.6□□□□□ -1.19
VPS35-206ENST00000565228 TECTBQ96PL2 329 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 MDFIQ99750 246 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 NUDT16L1Q9BRJ7 211 aaKnown RBP7.6□□□□□ -1.19
VPS35-206ENST00000565228 COMMD4Q9H0A8 199 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 SIRPDQ9H106 197 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 C7orf69Q9H7B7 122 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 NOX4Q9NPH5 578 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 ACOT13Q9NPJ3 140 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 C19orf12Q9NSK7 152 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 SCN3BQ9NY72 215 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 CLN8Q9UBY8 286 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 SLC7A11Q9UPY5 501 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 ERGIC3Q9Y282 383 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 TPRKBQ9Y3C4 175 aa7.6□□□□□ -1.19
VPS35-206ENST00000565228 ZNF879B4DU55 563 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 CDRT1O95170 752 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 PRDX2P32119 198 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 GABRA2P47869 451 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 ATP1B3P54709 279 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 FGF12P61328 243 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 FABP5Q01469 135 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 BDH1Q02338 343 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 COL10A1Q03692 680 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 CNN3Q15417 329 aaKnown RBP7.59□□□□□ -1.19
VPS35-206ENST00000565228 CHRFAM7AQ494W8 412 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 Q499Y3 187 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 YIF1BQ5BJH7 314 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 UTF1Q5T230 341 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 DCAF12L2Q5VW00 463 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 HCP5Q6MZN7 132 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 ASCL4Q6XD76 172 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 LHFPL2Q6ZUX7 228 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 RTN4RL2Q86UN3 420 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 SERPINA12Q8IW75 414 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 PHC2Q8IXK0 858 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 SPARTQ8N0X7 666 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 OR4S1Q8NGB4 309 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 C22orf15Q8WYQ4 148 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 ST8SIA4Q92187 359 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 TMEM203Q969S6 136 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 MRPL48Q96GC5 212 aaKnown RBP7.59□□□□□ -1.19
VPS35-206ENST00000565228 CEP19Q96LK0 163 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 DCTN5Q9BTE1 182 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 TMED9Q9BVK6 235 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 MND1Q9BWT6 205 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 CCDC90BQ9GZT6 254 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 KCNK15Q9H427 330 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 CHCHD3Q9NX63 227 aaKnown RBP7.59□□□□□ -1.19
VPS35-206ENST00000565228 DNAJB11Q9UBS4 358 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 OR14J1Q9UGF5 321 aa7.59□□□□□ -1.19
VPS35-206ENST00000565228 RPUSD1Q9UJJ7 312 aaKnown RBP7.59□□□□□ -1.19
VPS35-206ENST00000565228 A0A0G2JMP0 313 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 A0A0X1KG70 313 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 MDFIC2A0A1B0GVS7 189 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 RGS9O75916 674 aaPredicted RBP7.58□□□□□ -1.2
VPS35-206ENST00000565228 NXPH2O95156 264 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 ALDOBP05062 364 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 FAM157CP0CG43 387 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 CD37P11049 281 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 CPEP16870 476 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 FSTP19883 344 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 PRKACBP22694 351 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 TGFBR2P37173 567 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 DLX6P56179 175 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 ZNF273Q14593 569 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 TBCEQ15813 527 aaPredicted RBP7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms