RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 ANKRD39Q53RE8 183 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 SPINK14Q6IE38 97 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 HAGHLQ6PII5 290 aaPredicted RBP11.72□□□□□ -0.53
CLK3-215ENST00000564353 SLC22A25Q6T423 547 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 LYZL2Q7Z4W2 148 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 AGBL5Q8NDL9 886 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 C2CD4CQ8TF44 421 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 ERGIC1Q969X5 290 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 PHYHIPLQ96FC7 376 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 GUCD1Q96NT3 240 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 TAF9BQ9HBM6 251 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 PADI1Q9ULC6 663 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 FOXI3A8MTJ6 420 aaPredicted RBP11.72□□□□□ -0.53
CLK3-215ENST00000564353 C1QL1O75973 258 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 OR5AC1P0C628 307 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 MUC1P15941 1255 aaPredicted RBP11.72□□□□□ -0.53
CLK3-215ENST00000564353 DUSP1P28562 367 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 MST1LQ2TV78 715 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 GGNBP1Q5YKI7 109 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 PMS2CLQ68D20 193 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 MEX3BQ6ZN04 569 aaKnown RBP11.72□□□□□ -0.53
CLK3-215ENST00000564353 AAED1Q7RTV5 226 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 VASH2Q86V25 355 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 BORCS8Q96FH0 119 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 SLC5A7Q9GZV3 580 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 DEPPQ9NTK1 212 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 FOXD3Q9UJU5 478 aaPredicted RBP11.72□□□□□ -0.53
CLK3-215ENST00000564353 TMEM265A0A087WTH1 108 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 C9JQL5 133 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 F8VVB4 439 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 F8VWA3 439 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 HKR1P10072 659 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 NPBWR2P48146 333 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 CASP6P55212 293 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 CYCSP99999 105 aaKnown RBP11.71□□□□□ -0.53
CLK3-215ENST00000564353 PSG4Q00888 419 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 ACTBL2Q562R1 376 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 TRIM61Q5EBN2 209 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 TMEM105Q8N8V8 129 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 SUMF1Q8NBK3 374 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 SLC30A7Q8NEW0 376 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 FNDC9Q8TBE3 224 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 ARL11Q969Q4 196 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 Q96M66 194 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 NAA11Q9BSU3 229 aaPredicted RBP11.71□□□□□ -0.53
CLK3-215ENST00000564353 HES7Q9BYE0 225 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.71□□□□□ -0.53
CLK3-215ENST00000564353 FBXL17Q9UF56 701 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 ANXA10Q9UJ72 324 aa11.71□□□□□ -0.53
CLK3-215ENST00000564353 A0A1B0GV90 55 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 FGF5P12034 268 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 TCN2P20062 427 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 FCGR2CP31995 323 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 CD80P33681 288 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 FOXG1P55316 489 aaPredicted RBP11.71□□□□□ -0.54
CLK3-215ENST00000564353 C10orf128Q5T292 105 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 CALHM1Q8IU99 346 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 SGPP2Q8IWX5 399 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 OR10AD1Q8NGE0 317 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 OR10D3Q8NH80 312 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 HS3ST6Q96QI5 342 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 DNTTIP1Q9H147 329 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 METTL9Q9H1A3 318 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 CRIM1Q9NZV1 1036 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 GLS2Q9UI32 602 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 ANAPC10Q9UM13 185 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 FREM1Q5H8C1 2179 aa11.71□□□□□ -0.54
CLK3-215ENST00000564353 IGHV3-64DA0A0J9YX35 117 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 A0A0U1RQV5 110 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 H7C2Y5 167 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 K7EPK0 472 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 OR7C1O76099 320 aaPredicted RBP11.7□□□□□ -0.54
CLK3-215ENST00000564353 IGLV3-1P01715 115 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 P04436 131 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 CELA3AP09093 270 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 RPL12P30050 165 aaKnown RBP11.7□□□□□ -0.54
CLK3-215ENST00000564353 FOLR3P41439 243 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 RAB13P51153 203 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 ABCA11PQ4W5N1 156 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 PLCXD3Q63HM9 321 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 SLC16A14Q7RTX9 510 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 GPR137CQ8N3F9 429 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 FAM71E2Q8N5Q1 922 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 OR1F12Q8NHA8 337 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 PP6455Q8WZ26 134 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 NAT6Q93015 286 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 CNTNAP3BQ96NU0 1288 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 PAPOLGQ9BWT3 736 aaKnown RBP11.7□□□□□ -0.54
CLK3-215ENST00000564353 RHOFQ9HBH0 211 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 IL36RNQ9UBH0 155 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 ST3GAL6Q9Y274 331 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 KNTC1P50748 2209 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 SERPINE3A8MV23 424 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 FGF16O43320 207 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 SYNGR3O43761 229 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 NRASP01111 189 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 GDF1P27539 372 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 CLDN15P56746 228 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 TMEM33P57088 247 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 RAC1P63000 192 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms