RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 CANT1Q8WVQ1 401 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 RCC1LQ96I51 464 aaKnown RBP13.14□□□□□ -0.31
CLN3-208ENST00000561505 NSL1Q96IY1 281 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 LIN7BQ9HAP6 207 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 OR52A1Q9UKL2 312 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 IGKV1-27A0A075B6S5 117 aa13.13□□□□□ -0.31
CLN3-208ENST00000561505 IGHV2-26A0A0B4J1V2 119 aa13.13□□□□□ -0.31
CLN3-208ENST00000561505 LOC110117498-PIK3R3F6TDL0 507 aa13.13□□□□□ -0.31
CLN3-208ENST00000561505 DUS4LO95620 317 aaKnown RBP13.13□□□□□ -0.31
CLN3-208ENST00000561505 PRKACGP22612 351 aa13.13□□□□□ -0.31
CLN3-208ENST00000561505 ZNF322Q6U7Q0 402 aaPredicted RBP13.13□□□□□ -0.31
CLN3-208ENST00000561505 GDPD3Q7L5L3 318 aa13.13□□□□□ -0.31
CLN3-208ENST00000561505 COMMD2Q86X83 199 aa13.13□□□□□ -0.31
CLN3-208ENST00000561505 ASCC1Q8N9N2 400 aaKnown RBP13.13□□□□□ -0.31
CLN3-208ENST00000561505 OR4P4Q8NGL7 312 aa13.13□□□□□ -0.31
CLN3-208ENST00000561505 DNAJC9Q8WXX5 260 aa13.13□□□□□ -0.31
CLN3-208ENST00000561505 CEP19Q96LK0 163 aa13.13□□□□□ -0.31
CLN3-208ENST00000561505 OR5M11Q96RB7 305 aa13.13□□□□□ -0.31
CLN3-208ENST00000561505 APOL4Q9BPW4 351 aa13.13□□□□□ -0.31
CLN3-208ENST00000561505 ZNF556Q9HAH1 456 aa13.13□□□□□ -0.31
CLN3-208ENST00000561505 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.13□□□□□ -0.31
CLN3-208ENST00000561505 MRM2Q9UI43 246 aaKnown RBP13.13□□□□□ -0.31
CLN3-208ENST00000561505 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLN3-208ENST00000561505 HHLA2Q9UM44 414 aa13.13□□□□□ -0.31
CLN3-208ENST00000561505 TSSC4Q9Y5U2 329 aaPredicted RBP13.13□□□□□ -0.31
CLN3-208ENST00000561505 SESN1Q9Y6P5 492 aa13.13□□□□□ -0.31
CLN3-208ENST00000561505 hADV38S2A0JD32 116 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 F2RL2O00254 374 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 PEX14O75381 377 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 MPIG6BO95866 241 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 MRPL3P09001 348 aaKnown RBP13.12□□□□□ -0.31
CLN3-208ENST00000561505 ERP29P30040 261 aaKnown RBP13.12□□□□□ -0.31
CLN3-208ENST00000561505 CRISP1P54107 249 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 KRTAP10-11P60412 298 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 ACTR3P61158 418 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 BDH1Q02338 343 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 UBE2V2Q15819 145 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 SNAPC1Q16533 368 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 AADACL4Q5VUY2 407 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 ZBTB49Q6ZSB9 765 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 OR52N4Q8NGI2 321 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 NRBF2Q96F24 287 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 CNN2Q99439 309 aaKnown RBP13.12□□□□□ -0.31
CLN3-208ENST00000561505 TEX12Q9BXU0 123 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 TMEM133Q9H2Q1 129 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 INPP5EQ9NRR6 644 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 TVP23BQ9NYZ1 205 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 HILPDAQ9Y5L2 63 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 SNX5Q9Y5X3 404 aa13.12□□□□□ -0.31
CLN3-208ENST00000561505 PRKYO43930 277 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 MMP23AO75900 390 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 IGLV1-47P01700 117 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 AMY1AP04745 511 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 AMY2AP04746 511 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 HTR1DP28221 377 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 FUT6P51993 359 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 EDDM3BP56851 147 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 CXCR4P61073 352 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 SLC35A2P78381 396 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 ZNF91Q05481 1191 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 SLC34A1Q06495 639 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 ZNF146Q15072 292 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 BCL2L15Q5TBC7 163 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 FAHD1Q6P587 224 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 MEPCEQ7L2J0 689 aaKnown RBP13.11□□□□□ -0.31
CLN3-208ENST00000561505 CCDC54Q8NEL0 328 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 CORO2AQ92828 525 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 CLEC7AQ9BXN2 247 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 CADM1Q9BY67 442 aaKnown RBP13.11□□□□□ -0.31
CLN3-208ENST00000561505 ADGRL4Q9HBW9 690 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 CLN6Q9NWW5 311 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 IKZF2Q9UKS7 526 aa13.11□□□□□ -0.31
CLN3-208ENST00000561505 WI2-2373I1.2A0A1W2PRP0 233 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 H3BUI4 141 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 MAGEB4O15481 346 aaPredicted RBP13.1□□□□□ -0.31
CLN3-208ENST00000561505 PSPNO60542 156 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 CALB2P22676 271 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 CD34P28906 385 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 DYNC1I2Q13409 638 aaKnown RBP13.1□□□□□ -0.31
CLN3-208ENST00000561505 IL18R1Q13478 541 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 PTGES3Q15185 160 aaKnown RBP13.1□□□□□ -0.31
CLN3-208ENST00000561505 NXNL2Q5VZ03 156 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 C11orf87Q6NUJ2 197 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 BATF2Q8N1L9 274 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 ZNF676Q8N7Q3 588 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 MYDGFQ969H8 173 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 C10orf35Q96D05 121 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 LRGUKQ96M69 825 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 CHST5Q9GZS9 411 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.1□□□□□ -0.31
CLN3-208ENST00000561505 DPM3Q9P2X0 92 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 SLC7A11Q9UPY5 501 aa13.1□□□□□ -0.31
CLN3-208ENST00000561505 UBE2J1Q9Y385 318 aaPredicted RBP13.1□□□□□ -0.31
CLN3-208ENST00000561505 MEX3AA1L020 520 aaKnown RBP13.09□□□□□ -0.31
CLN3-208ENST00000561505 A6NIN4 97 aa13.09□□□□□ -0.31
CLN3-208ENST00000561505 GNGT2O14610 69 aa13.09□□□□□ -0.31
CLN3-208ENST00000561505 DNAJC8O75937 253 aaPredicted RBP13.09□□□□□ -0.31
CLN3-208ENST00000561505 PEX2P28328 305 aa13.09□□□□□ -0.31
CLN3-208ENST00000561505 ESRRGP62508 458 aa13.09□□□□□ -0.31
CLN3-208ENST00000561505 HEPN1Q6WQI6 88 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms