RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 NOTCH3Q9UM47 2321 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 DSCAML1Q8TD84 2053 aa9.4□□□□□ -0.91
USP3-220ENST00000561381 hCG_1809904A0A1W2PP81 198 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 A0A1W2PPE2 198 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 A0A1W2PR64 198 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 A0A1W2PRV1 198 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 ZAR1LA6NP61 321 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 VGLL3A8MV65 326 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 ODF3BA8MYP8 253 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 ZNF737O75373 536 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 ARG1P05089 322 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 CD28P10747 220 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 EDDM3BP56851 147 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 IL24Q13007 206 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 UBE2V2Q15819 145 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 FAM189A2Q15884 450 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 SSX2Q16385 188 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 NSUN5P1Q3KNT7 163 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 DNAL1Q4LDG9 190 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 SAMD5Q5TGI4 173 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 NXNL2Q5VZ03 156 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 C12orf73Q69YU5 71 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 C11orf88Q6PI97 169 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 Q6ZS46 218 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 SLAMF9Q96A28 289 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 CADM1Q9BY67 442 aaKnown RBP9.39□□□□□ -0.91
USP3-220ENST00000561381 PKIBQ9C010 78 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 KRT84Q9NSB2 600 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 SERTAD4Q9NUC0 356 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 MTCH1Q9NZJ7 389 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 TCF19Q9Y242 345 aa9.39□□□□□ -0.91
USP3-220ENST00000561381 A0A1W2PQL4 384 aaPredicted RBP9.38□□□□□ -0.91
USP3-220ENST00000561381 TMEM82A0PJX8 343 aa9.38□□□□□ -0.91
USP3-220ENST00000561381 A6NDX4 124 aa9.38□□□□□ -0.91
USP3-220ENST00000561381 DNAJC8O75937 253 aaPredicted RBP9.38□□□□□ -0.91
USP3-220ENST00000561381 ZNF728P0DKX0 622 aa9.38□□□□□ -0.91
USP3-220ENST00000561381 CCL1P22362 96 aa9.38□□□□□ -0.91
USP3-220ENST00000561381 POLR2IP36954 125 aaKnown RBP9.38□□□□□ -0.91
USP3-220ENST00000561381 ACTR3P61158 418 aa9.38□□□□□ -0.91
USP3-220ENST00000561381 KPRPQ5T749 579 aaPredicted RBP9.38□□□□□ -0.91
USP3-220ENST00000561381 ZNF626Q68DY1 528 aa9.38□□□□□ -0.91
USP3-220ENST00000561381 CATSPERDQ86XM0 798 aa9.38□□□□□ -0.91
USP3-220ENST00000561381 Q8N2B8 174 aa9.38□□□□□ -0.91
USP3-220ENST00000561381 TPRX1Q8N7U7 411 aa9.38□□□□□ -0.91
USP3-220ENST00000561381 YIPF7Q8N8F6 280 aa9.38□□□□□ -0.91
USP3-220ENST00000561381 CEP19Q96LK0 163 aa9.38□□□□□ -0.91
USP3-220ENST00000561381 OR5M11Q96RB7 305 aa9.38□□□□□ -0.91
USP3-220ENST00000561381 MNTQ99583 582 aa9.38□□□□□ -0.91
USP3-220ENST00000561381 PRRG3Q9BZD7 231 aa9.38□□□□□ -0.91
USP3-220ENST00000561381 IL36RNQ9UBH0 155 aa9.38□□□□□ -0.91
USP3-220ENST00000561381 DHRS7CA6NNS2 312 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 SYT7O43581 403 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 FBXO24O75426 580 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 KRT8P05787 483 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 CHRM2P08172 466 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 IGHV1-8P0DP01 117 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 CALCBP10092 127 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 DYNC1I2Q13409 638 aaKnown RBP9.37□□□□□ -0.91
USP3-220ENST00000561381 EDDM3AQ14507 147 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 CNN3Q15417 329 aaKnown RBP9.37□□□□□ -0.91
USP3-220ENST00000561381 ATP6AP1Q15904 470 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 TMEM95Q3KNT9 176 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 OXLD1Q5BKU9 147 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 KDM4DQ6B0I6 523 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 Q6ZPA2 131 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 SLC25A26Q70HW3 274 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 GDPD3Q7L5L3 318 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 AMIGO2Q86SJ2 522 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 GID4Q8IVV7 300 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 RDH10Q8IZV5 341 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 OR8H2Q8N162 312 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 OR11H6Q8NGC7 330 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 OR52N4Q8NGI2 321 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 OR13D1Q8NGV5 346 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 MALSU1Q96EH3 234 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 CDCA4Q9BXL8 241 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 CHST6Q9GZX3 395 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 MMP28Q9H239 520 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 PLEKHA1Q9HB21 404 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 SLC7A11Q9UPY5 501 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 TBL2Q9Y4P3 447 aaKnown RBP9.37□□□□□ -0.91
USP3-220ENST00000561381 HILPDAQ9Y5L2 63 aa9.37□□□□□ -0.91
USP3-220ENST00000561381 ADARB2-AS1A8MUL3 147 aa9.36□□□□□ -0.91
USP3-220ENST00000561381 G3V2T6 193 aa9.36□□□□□ -0.91
USP3-220ENST00000561381 MMP23AO75900 390 aa9.36□□□□□ -0.91
USP3-220ENST00000561381 DUSP1P28562 367 aa9.36□□□□□ -0.91
USP3-220ENST00000561381 ACTA2P62736 377 aa9.36□□□□□ -0.91
USP3-220ENST00000561381 BLCAPP62952 87 aa9.36□□□□□ -0.91
USP3-220ENST00000561381 ACTG2P63267 376 aa9.36□□□□□ -0.91
USP3-220ENST00000561381 ACTC1P68032 377 aa9.36□□□□□ -0.91
USP3-220ENST00000561381 ACTA1P68133 377 aa9.36□□□□□ -0.91
USP3-220ENST00000561381 EGFL6Q8IUX8 553 aa9.36□□□□□ -0.91
USP3-220ENST00000561381 PRSS35Q8N3Z0 413 aa9.36□□□□□ -0.91
USP3-220ENST00000561381 OR10H4Q8NGA5 316 aa9.36□□□□□ -0.91
USP3-220ENST00000561381 RPS4Y2Q8TD47 263 aa9.36□□□□□ -0.91
USP3-220ENST00000561381 WIPF2Q8TF74 440 aaPredicted RBP9.36□□□□□ -0.91
USP3-220ENST00000561381 FOXRED1Q96CU9 486 aaPredicted RBP9.36□□□□□ -0.91
USP3-220ENST00000561381 SNX22Q96L94 193 aa9.36□□□□□ -0.91
USP3-220ENST00000561381 ZNF714Q96N38 554 aa9.36□□□□□ -0.91
USP3-220ENST00000561381 CIB1Q99828 191 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms