RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	SNRPG	P62308	76 aa	Known RBP	11.5	□□□□□ -0.57
TPM1-223	ENST00000560445	C2orf68	Q2NKX9	166 aa		11.5	□□□□□ -0.57
TPM1-223	ENST00000560445	TMEM200B	Q69YZ2	307 aa		11.5	□□□□□ -0.57
TPM1-223	ENST00000560445	ZBTB49	Q6ZSB9	765 aa		11.5	□□□□□ -0.57
TPM1-223	ENST00000560445	LHFPL2	Q6ZUX7	228 aa		11.5	□□□□□ -0.57
TPM1-223	ENST00000560445	UTS2B	Q765I0	119 aa		11.5	□□□□□ -0.57
TPM1-223	ENST00000560445	OR8H2	Q8N162	312 aa		11.5	□□□□□ -0.57
TPM1-223	ENST00000560445	TRMT10A	Q8TBZ6	339 aa	Known RBP	11.5	□□□□□ -0.57
TPM1-223	ENST00000560445	PPP1R14A	Q96A00	147 aa		11.5	□□□□□ -0.57
TPM1-223	ENST00000560445	CDCA4	Q9BXL8	241 aa		11.5	□□□□□ -0.57
TPM1-223	ENST00000560445	MEGF9	Q9H1U4	602 aa		11.5	□□□□□ -0.57
TPM1-223	ENST00000560445	PITPNC1	Q9UKF7	332 aa		11.5	□□□□□ -0.57
TPM1-223	ENST00000560445	TBL2	Q9Y4P3	447 aa	Known RBP	11.5	□□□□□ -0.57
TPM1-223	ENST00000560445	PKD1L1	Q8TDX9	2849 aa		11.5	□□□□□ -0.57
TPM1-223	ENST00000560445	SLC16A6	O15403	523 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	MAGEB4	O15481	346 aa	Predicted RBP	11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	ISG15	P05161	165 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	HTR1A	P08908	422 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	PEX2	P28328	305 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	CCR9	P51686	369 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	ARHGDIB	P52566	201 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	EDDM3B	P56851	147 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	ODF4	Q2M2E3	257 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	SPIN3	Q5JUX0	258 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	FDX2	Q6P4F2	183 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445		Q6ZSV7	163 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445		Q6ZTK2	550 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	SLC25A26	Q70HW3	274 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	SSX6	Q7RTT6	188 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	ACBD7	Q8N6N7	88 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	OR2G2	Q8NGZ5	317 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	OR2T6	Q8NHC8	308 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	EMG1	Q92979	244 aa	Known RBP	11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	RNFT2	Q96EX2	444 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	SNX22	Q96L94	193 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	ZNF488	Q96MN9	340 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	SSX3	Q99909	188 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	C9orf16	Q9BUW7	83 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	PPA2	Q9H2U2	334 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	ABCB10	Q9NRK6	738 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	INPP5E	Q9NRR6	644 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	FBLN5	Q9UBX5	448 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	HHLA2	Q9UM44	414 aa		11.49	□□□□□ -0.57
TPM1-223	ENST00000560445	EI24	O14681	340 aa		11.48	□□□□□ -0.57
TPM1-223	ENST00000560445	FADS2	O95864	444 aa	Known RBP	11.48	□□□□□ -0.57
TPM1-223	ENST00000560445	TFF1	P04155	84 aa		11.48	□□□□□ -0.57
TPM1-223	ENST00000560445	ZNF728	P0DKX0	622 aa		11.48	□□□□□ -0.57
TPM1-223	ENST00000560445	MTCP1	P56278	107 aa		11.48	□□□□□ -0.57
TPM1-223	ENST00000560445	ISL1	P61371	349 aa		11.48	□□□□□ -0.57
TPM1-223	ENST00000560445	COL10A1	Q03692	680 aa		11.48	□□□□□ -0.57
TPM1-223	ENST00000560445	UBE2V2	Q15819	145 aa		11.48	□□□□□ -0.57
TPM1-223	ENST00000560445	TP53I3	Q53FA7	332 aa		11.48	□□□□□ -0.57
TPM1-223	ENST00000560445	DMRTC1	Q5HYR2	192 aa		11.48	□□□□□ -0.57
TPM1-223	ENST00000560445	ANGPTL5	Q86XS5	388 aa		11.48	□□□□□ -0.57
TPM1-223	ENST00000560445	ZNF714	Q96N38	554 aa		11.48	□□□□□ -0.57
TPM1-223	ENST00000560445	TRBV2	A0A0J9YWF9	115 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445		A6NIN4	97 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	C17orf98	A8MV24	154 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	VGLL3	A8MV65	326 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	APOL3	O95236	402 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	HAND1	O96004	215 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	ALDOB	P05062	364 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	COX7A1	P24310	79 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	BMX	P51813	675 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	ZNF85	Q03923	595 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	ZIK1	Q3SY52	487 aa	Predicted RBP	11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	PNKD	Q8N490	385 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	CBR4	Q8N4T8	237 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	ZNF676	Q8N7Q3	588 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	OR4M1	Q8NGD0	313 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	RPS4Y2	Q8TD47	263 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	SLAMF9	Q96A28	289 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	MALSU1	Q96EH3	234 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	OPALIN	Q96PE5	141 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	GMPPB	Q9Y5P6	360 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445	LINC00312	Q9Y6C7	94 aa		11.47	□□□□□ -0.57
TPM1-223	ENST00000560445		H3BNX3	289 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	MGST3	O14880	152 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	ENTPD6	O75354	484 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	MT-ND2	P03891	347 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	CCDC159	P0C7I6	412 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	PIP	P12273	146 aa	Predicted RBP	11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	ATF1	P18846	271 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	GABRR1	P24046	479 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	AZGP1	P25311	298 aa	Known RBP	11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	KIR2DS4	P43632	304 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	POU3F4	P49335	361 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	CEBPD	P49716	269 aa	Predicted RBP	11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	OR12D2	P58182	307 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	IL18R1	Q13478	541 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	ZNF146	Q15072	292 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	GRK1	Q15835	563 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	MINOS1	Q5TGZ0	78 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	OR52W1	Q6IF63	320 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	HCP5	Q6MZN7	132 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	SAXO1	Q8IYX7	474 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	FAM58A	Q8N1B3	248 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	SYS1	Q8N2H4	156 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	PRSS35	Q8N3Z0	413 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	CHST4	Q8NCG5	386 aa		11.46	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms