RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 NEUROG3Q9Y4Z2 214 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 BAZ2AQ9UIF9 1905 aaKnown RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 PCM1Q15154 2024 aa2.15□□□□□ -2.06
VPS13C-208ENST00000559119 LOXHD1Q8IVV2 1947 aa2.15□□□□□ -2.06
VPS13C-208ENST00000559119 SHANK3Q9BYB0 1731 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 A0A0D9SG52 128 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 A0A0U1RRA0 63 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 A0A1B0GUH1 482 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 IRGMA1A4Y4 181 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 TRDCB7Z8K6 153 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 DISC1C4P0D8 188 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 C5orf58C9J3I9 102 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 HSBP1L1C9JCN9 74 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 H7C417 338 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 M0QYV0 167 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 M0QZK8 103 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 ITGB1BP1O14713 200 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 CASKO14936 926 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 SLC16A4O15374 487 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 FGF16O43320 207 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 PPIHO43447 177 aaKnown RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 FADS1O60427 444 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 EIF4E2O60573 245 aaKnown RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 CBR3O75828 277 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 DIRAS3O95661 229 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 RAB3DO95716 219 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 SOD1P00441 154 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 OTCP00480 354 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 MBP02144 154 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 MT-ND4LP03901 98 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 OPN1LWP04000 364 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 OR4E1P0C645 316 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 IQCF3P0C7M6 154 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 METTL15P1P0C7V9 234 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 GKN3PP0CG01 181 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 CD79AP11912 226 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 CXCL3P19876 107 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 CNR1P21554 472 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 HTR2AP28223 471 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 DDTP30046 118 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 PRDX3P30048 256 aaKnown RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 DLSTP36957 453 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 GYG1P46976 350 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 SULT1E1P49888 294 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 HCCSP53701 268 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 CRISP3P54108 245 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 CLDN8P56748 225 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 TAS2R39P59534 338 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 KRTAP12-3P60328 96 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 CDC42P60953 191 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 OSTNP61366 133 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 RAP1AP62834 184 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 EIF5AP63241 154 aaKnown RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 PITPNAQ00169 270 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 GLO1Q04760 184 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 FABP9Q0Z7S8 132 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 SRSF5Q13243 272 aaKnown RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 C1DQ13901 141 aaKnown RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 IL18Q14116 193 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 DOC2AQ14183 400 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 PEA15Q15121 130 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 TOMM34Q15785 309 aaPredicted RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 SLC36A2Q495M3 483 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 ATP6AP1LQ52LC2 224 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 TMEM41BQ5BJD5 291 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 RNASE10Q5GAN6 216 aaKnown RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 TMEM31Q5JXX7 168 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 FAM74A1Q5RGS3 127 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 BCL2L15Q5TBC7 163 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 TMEM244Q5VVB8 128 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 LIPNQ5VXI9 398 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 Q5W150 140 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 NCBP2-AS2Q69YL0 99 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 CLEC6AQ6EIG7 209 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 SLC39A4Q6P5W5 647 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 CNIH2Q6PI25 160 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 SLC25A34Q6PIV7 304 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 DCXRQ7Z4W1 244 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 HSD11B1LQ7Z5J1 315 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 DPPA2Q7Z7J5 298 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 LRRC28Q86X40 367 aaPredicted RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF573Q86YE8 665 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 MFSD6LQ8IWD5 586 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF567Q8N184 647 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 STK40Q8N2I9 435 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 TRAM1L1Q8N609 369 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 EID2Q8N6I1 236 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 FAM86B1Q8N7N1 296 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 BCORP1Q8N888 145 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 OR4K15Q8NH41 348 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 OR10A6Q8NH74 314 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 OR10J5Q8NHC4 309 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 COQ8AQ8NI60 647 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 GNPDA2Q8TDQ7 276 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 RXFP4Q8TDU9 374 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 LCN9Q8WX39 176 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 RXFP2Q8WXD0 754 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 ACOT11Q8WXI4 607 aaPredicted RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 TMEM45BQ96B21 275 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 RNF185Q96GF1 192 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms