RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 AIMP2Q13155 320 aaKnown RBP6.31□□□□□ -1.4
VPS13C-206ENST00000558338 CCDC157Q569K6 752 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 PLCXD3Q63HM9 321 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.31□□□□□ -1.4
VPS13C-206ENST00000558338 TIPARPQ7Z3E1 657 aaKnown RBP6.31□□□□□ -1.4
VPS13C-206ENST00000558338 C6orf201Q7Z4U5 140 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 OSR2Q8N2R0 312 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 POC1AQ8NBT0 407 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 SLC30A7Q8NEW0 376 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 OR2M7Q8NG81 312 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 OR2AE1Q8NHA4 323 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 AKR7LQ8NHP1 331 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FNDC9Q8TBE3 224 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 SPSB4Q96A44 273 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF2Q9BSG1 426 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-206ENST00000558338 C1QTNF5Q9BXJ0 243 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF703Q9H7S9 590 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF286AQ9HBT8 521 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 DEPPQ9NTK1 212 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 ZFP57Q9NU63 452 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 TAS2R3Q9NYW6 316 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 MCTS1Q9ULC4 181 aaKnown RBP6.31□□□□□ -1.4
VPS13C-206ENST00000558338 KCNIP3Q9Y2W7 256 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 NCOA6Q14686 2063 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-206ENST00000558338 SDK1Q7Z5N4 2213 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 KRTAP9-6A0A140TA67 174 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 CRYM-AS1A6NIL9 109 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF587BE7ETH6 402 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 RPL36A-HNRNPH2H7BZ11 118 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 SDCBPO00560 298 aaPredicted RBP6.3□□□□□ -1.4
VPS13C-206ENST00000558338 FCGR3AP08637 254 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 MMP7P09237 267 aaPredicted RBP6.3□□□□□ -1.4
VPS13C-206ENST00000558338 RPS2P15880 293 aaKnown RBP6.3□□□□□ -1.4
VPS13C-206ENST00000558338 FAM3AP98173 230 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 FOXO1Q12778 655 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 MALLQ13021 153 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 PDZK1IP1Q13113 114 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 CLN3Q13286 438 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 ANKRD55Q3KP44 614 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 DPPA2Q7Z7J5 298 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 BAP18Q8IXM2 172 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 SAXO1Q8IYX7 474 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 DEFB123Q8N688 67 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 RELL2Q8NC24 303 aaPredicted RBP6.3□□□□□ -1.4
VPS13C-206ENST00000558338 RNF141Q8WVD5 230 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF75AQ96N20 296 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 SPRY4Q9C004 299 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 AK3Q9UIJ7 227 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF850A8MQ14 1090 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF724A8MTY0 619 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 FGF16O43320 207 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 PDCD6O75340 191 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 SCO1O75880 301 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 HOXD4P09016 255 aaPredicted RBP6.3□□□□□ -1.4
VPS13C-206ENST00000558338 OR5H8P0DN80 308 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 GLRA1P23415 457 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 PTGER4P35408 488 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 GLP1RP43220 463 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 UCP3P55916 312 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 HGFACQ04756 655 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 PMS2P11Q13670 270 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 TAF9Q16594 264 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 ABCA11PQ4W5N1 156 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 BEX5Q5H9J7 111 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 PABPC1L2AQ5JQF8 200 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 ELP2Q6IA86 826 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 TMEM211Q6ICI0 200 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 DHRS11Q6UWP2 260 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 SKA3Q8IX90 412 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 CCDC71LQ8N9Z2 235 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 ZBTB44Q8NCP5 570 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 ABHD3Q8WU67 409 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 PSMF1Q92530 271 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 ARL11Q969Q4 196 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 MARC2Q969Z3 335 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 SYT3Q9BQG1 590 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 RNF126Q9BV68 326 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 SUCNR1Q9BXA5 334 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 WDR13Q9H1Z4 485 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 LDAHQ9H6V9 325 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 BARX1Q9HBU1 254 aaPredicted RBP6.3□□□□□ -1.4
VPS13C-206ENST00000558338 C12orf4Q9NQ89 552 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 GPR160Q9UJ42 338 aa6.3□□□□□ -1.4
VPS13C-206ENST00000558338 KLF13Q9Y2Y9 288 aaPredicted RBP6.3□□□□□ -1.4
VPS13C-206ENST00000558338 NCKAP5O14513 1909 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 IGKV1-27A0A075B6S5 117 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 C9orf172C9J069 976 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 SPRY1O43609 319 aaPredicted RBP6.29□□□□□ -1.4
VPS13C-206ENST00000558338 ANGPTL7O43827 346 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 ADAP1O75689 374 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 NEURL1O76050 574 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 KNG1P01042 644 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF728P0DKX0 622 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF708P17019 499 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 PI3P19957 117 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 NTF4P34130 210 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 ARR3P36575 388 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 LHX2P50458 406 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 RBM11P57052 281 aaKnown RBP6.29□□□□□ -1.4
VPS13C-206ENST00000558338 S100A10P60903 97 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms