RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 PRKCDQ05655 676 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 ST3GAL4Q11206 333 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 MLLT11Q13015 90 aaPredicted RBP2.19□□□□□ -2.06
TRAV28-201ENST00000557548 DYNC1I2Q13409 638 aaKnown RBP2.19□□□□□ -2.06
TRAV28-201ENST00000557548 GINS1Q14691 196 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 PTGES3Q15185 160 aaKnown RBP2.19□□□□□ -2.06
TRAV28-201ENST00000557548 SLC9A3R2Q15599 337 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 RSPO1Q2MKA7 263 aaPredicted RBP2.19□□□□□ -2.06
TRAV28-201ENST00000557548 CCDC153Q494R4 210 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 HACD4Q5VWC8 232 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 SYPL2Q5VXT5 272 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 OTPQ5XKR4 325 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 ARL9Q6T311 187 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 FAM131AQ6UXB0 335 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 LYPD2Q6UXB3 125 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 Q6ZR54 194 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 Q6ZVH6 145 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 TMED4Q7Z7H5 227 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 MYPOPQ86VE0 399 aaPredicted RBP2.19□□□□□ -2.06
TRAV28-201ENST00000557548 WDFY1Q8IWB7 410 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 LRRC52Q8N7C0 313 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 COX18Q8N8Q8 333 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 PXT1Q8NFP0 134 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 OR2V1Q8NHB1 315 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 YIPF6Q96EC8 236 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 IMMP1LQ96LU5 166 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 PRAP1Q96NZ9 151 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 TEAD3Q99594 435 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 ARL6Q9H0F7 186 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 LHX5Q9H2C1 402 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 ABCB9Q9NP78 766 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 ZDHHC4Q9NPG8 344 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 ISYNA1Q9NPH2 558 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 DIABLOQ9NR28 239 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 IL17CQ9P0M4 197 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 ZNF257Q9Y2Q1 563 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 MTCH2Q9Y6C9 303 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 ALKQ9UM73 1620 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 CPDO75976 1380 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 KIF24Q5T7B8 1368 aa2.19□□□□□ -2.06
TRAV28-201ENST00000557548 PCF11O94913 1555 aaKnown RBP2.19□□□□□ -2.06
TRAV28-201ENST00000557548 CLTCQ00610 1675 aaKnown RBP2.18□□□□□ -2.06
TRAV28-201ENST00000557548 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP2.18□□□□□ -2.06
TRAV28-201ENST00000557548 CAMSAP1Q5T5Y3 1602 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 HECW1Q76N89 1606 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 SMIM26A0A096LP01 95 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 IGHV3-74A0A0B4J1X5 117 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 IGHV3OR16-9A0A0B4J2B5 98 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 KIR2DS1A0A191URI9 304 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 VPS37CA5D8V6 355 aaPredicted RBP2.18□□□□□ -2.06
TRAV28-201ENST00000557548 F5H768 121 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 PFDN6O15212 129 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 SS18L1O75177 396 aaPredicted RBP2.18□□□□□ -2.06
TRAV28-201ENST00000557548 CTDNEP1O95476 244 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 LY6G6DO95868 133 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 IFNA16P05015 189 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 S100A1P23297 94 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 F8A1P23610 371 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 MYL9P24844 172 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 LOXP28300 417 aaPredicted RBP2.18□□□□□ -2.06
TRAV28-201ENST00000557548 SERPINB1P30740 379 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 NUDT1P36639 197 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 GALR1P47211 349 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 CRISP3P54108 245 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 CDKN2DP55273 166 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 TAS2R46P59540 309 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 UBE2NP61088 152 aaKnown RBP2.18□□□□□ -2.06
TRAV28-201ENST00000557548 HERVK_113P61574 105 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 RPL19P84098 196 aaKnown RBP2.18□□□□□ -2.06
TRAV28-201ENST00000557548 RPL18AQ02543 176 aaKnown RBP2.18□□□□□ -2.06
TRAV28-201ENST00000557548 SMCO1Q147U7 214 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 KIR2DS1Q14954 304 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 TAF1AQ15573 450 aaPredicted RBP2.18□□□□□ -2.06
TRAV28-201ENST00000557548 OR1Q1Q15612 314 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 CCDC58Q4VC31 144 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 TRIQKQ629K1 86 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 CEMP1Q6PRD7 247 aaPredicted RBP2.18□□□□□ -2.06
TRAV28-201ENST00000557548 CD200R1LQ6Q8B3 271 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 EPGNQ6UW88 154 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 FAM92BQ6ZTR7 304 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 DAW1Q8N136 415 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 LINC00612Q8N6U2 182 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 OR5L1Q8NGL2 311 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 OR2AE1Q8NHA4 323 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 SYNPRQ8TBG9 265 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 DOK4Q8TEW6 326 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 CASTOR1Q8WTX7 329 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 RXFP2Q8WXD0 754 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 ANKRD9Q96BM1 317 aaPredicted RBP2.18□□□□□ -2.06
TRAV28-201ENST00000557548 DCPSQ96C86 337 aaKnown RBP2.18□□□□□ -2.06
TRAV28-201ENST00000557548 TLCD1Q96CP7 247 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 SMIM19Q96E16 107 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 ADTRPQ96IZ2 230 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 KCTD7Q96MP8 289 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 HBEGFQ99075 208 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 TSNAXQ99598 290 aaKnown RBP2.18□□□□□ -2.06
TRAV28-201ENST00000557548 APOL4Q9BPW4 351 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 NIPSNAP1Q9BPW8 284 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 TRIM4Q9C037 500 aa2.18□□□□□ -2.06
TRAV28-201ENST00000557548 ARV1Q9H2C2 271 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms