RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TFF2	Q03403	129 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	ZNF774	Q6NX45	483 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	ANKRD37	Q7Z713	158 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	MYPOP	Q86VE0	399 aa	Predicted RBP	4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	OR1L3	Q8NH93	324 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	POC1B	Q8TC44	478 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	MRGPRX1	Q96LB2	322 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	IL17B	Q9UHF5	180 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	KCNK7	Q9Y2U2	307 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	STARD10	Q9Y365	291 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	WSB1	Q9Y6I7	421 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	IGHV5-51	A0A0C4DH38	117 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	TRGC2	P03986	189 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	ASAH2B	P0C7U1	165 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	IL2RG	P31785	369 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	FHIT	P49789	147 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	SULT1A2	P50226	295 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	FOXL2	P58012	376 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	RPS11	P62280	158 aa	Known RBP eCLIP	4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	IQCJ	Q1A5X6	159 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	TMEM196	Q5HYL7	178 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	STPG1	Q5TH74	334 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	ANKRD33	Q7Z3H0	272 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	OR10V1	Q8NGI7	309 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	OR1L6	Q8NGR2	347 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	OR1K1	Q8NGR3	316 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	ZNF596	Q8TC21	504 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	WFIKKN1	Q96NZ8	548 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	EDEM2	Q9BV94	578 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	SARG	Q9BW04	601 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	ZDHHC11	Q9H8X9	412 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	TMEM100	Q9NV29	134 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	FUT9	Q9Y231	359 aa		4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	MRPS17	Q9Y2R5	130 aa	Known RBP	4.4	□□□□□ -1.7
SYNE2-223	ENST00000557005	FIGNL2	A6NMB9	653 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	C17orf51	A8MQB3	221 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF814	B7Z6K7	855 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005		K7EQS6	105 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	ARPC3	O15145	178 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	SLC31A2	O15432	143 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	DHRS3	O75911	302 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	C1QL1	O75973	258 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	OR2A4	O95047	310 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	NXPH2	O95156	264 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	NTF3	P20783	257 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	TMEM50B	P56557	158 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	FUT7	Q11130	342 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	RPEL1	Q2QD12	228 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	ACOT6	Q3I5F7	207 aa	Predicted RBP	4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	SPATA46	Q5T0L3	261 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	APCDD1L	Q8NCL9	501 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF439	Q8NDP4	499 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	OR1N1	Q8NGS0	311 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	ADAMTS17	Q8TE56	1095 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	RDH5	Q92781	318 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	EXTL1	Q92935	676 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	OR2A7	Q96R45	310 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	TMEM204	Q9BSN7	226 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	C5orf66	Q9H5L9	145 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	TIMM10B	Q9Y5J6	103 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	NPTN	Q9Y639	398 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	TRAV34	A0A0B4J273	112 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	TIMM8A	O60220	97 aa	Predicted RBP	4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	PNLIP	P16233	465 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	SST	P61278	116 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	SHB	Q15464	509 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	ADPRHL1	Q8NDY3	354 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	ST8SIA1	Q92185	356 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	LHX4	Q969G2	390 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	ADGRG7	Q96K78	797 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	POLR2A	P24928	1970 aa	Known RBP	4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	TRIP12	Q14669	1992 aa	Predicted RBP	4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	IGKV1D-42	A0A075B6H8	117 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF732	B4DXR9	585 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	TERT	O14746	1132 aa	Known RBP	4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	EFS	O43281	561 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	PDGFB	P01127	241 aa	Predicted RBP	4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	CT45A8	P0DMV1	189 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	CT45A9	P0DMV2	189 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	NDUFB7	P17568	137 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	MRPS21	P82921	87 aa	Known RBP	4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	RAB31	Q13636	194 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	EDDM3A	Q14507	147 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	HABP2	Q14520	560 aa	Predicted RBP	4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	TMEM241	Q24JQ0	296 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	CT45A2	Q5DJT8	189 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF343	Q6P1L6	599 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF880	Q6PDB4	577 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	SLC25A26	Q70HW3	274 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZDHHC23	Q8IYP9	409 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	CYB561D1	Q8N8Q1	229 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	OR10G3	Q8NGC4	313 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	RPP25	Q9BUL9	199 aa	Known RBP	4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	CACFD1	Q9UGQ2	172 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	NAT8	Q9UHE5	227 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	MTCH2	Q9Y6C9	303 aa		4.4	□□□□□ -1.71
SYNE2-223	ENST00000557005	LRP5L	A4QPB2	252 aa		4.39	□□□□□ -1.71
SYNE2-223	ENST00000557005	DEFB108A	A8MXU0	73 aa		4.39	□□□□□ -1.71
SYNE2-223	ENST00000557005	TNFRSF10C	O14798	259 aa		4.39	□□□□□ -1.71
SYNE2-223	ENST00000557005	PNP	P00491	289 aa		4.39	□□□□□ -1.71

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