RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 ACP7Q6ZNF0 438 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 ZNF826PQ6ZT77 177 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 MOGAT3Q86VF5 341 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 OSR2Q8N2R0 312 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 OR5H6Q8NGV6 325 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 OR11L1Q8NGX0 322 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 MCFD2Q8NI22 146 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 RFT1Q96AA3 541 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 SLC25A38Q96DW6 304 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 S100A13Q99584 98 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 CCL19Q99731 98 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 VRK1Q99986 396 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-211ENST00000552338 LPAR5Q9H1C0 372 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 MIXL1Q9H2W2 232 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 BEX4Q9NWD9 120 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-211ENST00000552338 C1orf123Q9NWV4 160 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 KAAG1Q9UBP8 84 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 HSF4Q9ULV5 492 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 ING4Q9UNL4 249 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 PTPN13Q12923 2485 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 SMIM30A4D0T7 59 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 LRRC30A6NM36 301 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 POM121CA8CG34 1229 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 F8VVB4 439 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 F8VWA3 439 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 RAB27BO00194 218 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 CTDSP2O14595 271 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 NDUFA2O43678 99 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 CA11O75493 328 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 SNRPBP14678 240 aaKnown RBP8.04□□□□□ -1.12
LIMA1-211ENST00000552338 MGMTP16455 207 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 BCL3P20749 454 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 COL8A2P25067 703 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 ART1P52961 327 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 CLDN12P56749 244 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 RBM11P57052 281 aaKnown RBP8.04□□□□□ -1.12
LIMA1-211ENST00000552338 HFEQ30201 348 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 UBE2NLQ5JXB2 153 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 SHEQ5VZ18 495 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 Q6P435 159 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 BIVMQ86UB2 503 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 CCDC190Q86UF4 302 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 FAM58AQ8N1B3 248 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 TMEM104Q8NE00 496 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 OR5D18Q8NGL1 313 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 OR6Q1Q8NGQ2 317 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 LGALS14Q8TCE9 139 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 LRRC29Q8WV35 223 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 YIPF5Q969M3 257 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 SLAMF9Q96A28 289 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 GAL3ST1Q99999 423 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 DCUN1D5Q9BTE7 237 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 URM1Q9BTM9 101 aaKnown RBP8.04□□□□□ -1.12
LIMA1-211ENST00000552338 TMEM59Q9BXS4 323 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 CHODLQ9H9P2 273 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 BARX1Q9HBU1 254 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-211ENST00000552338 RHBDL2Q9NX52 303 aa8.04□□□□□ -1.12
LIMA1-211ENST00000552338 RCC2Q9P258 522 aaKnown RBP8.04□□□□□ -1.12
LIMA1-211ENST00000552338 YLPM1P49750 1951 aaKnown RBP8.04□□□□□ -1.12
LIMA1-211ENST00000552338 NBPF19A0A087WUL8 3843 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 A0A0B4J203 849 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 A0A1W2PP11 408 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 METTL21EPA6NDL7 271 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 A6NLC8 198 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 LGALS8O00214 317 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 NDUFS8O00217 210 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 GPR37O15354 613 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 XRCC3O43542 346 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 IGHV2-70P01814 119 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 MELTFP08582 738 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 CSF3P09919 207 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 IRF2P14316 349 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 DAOP14920 347 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 GLRA1P23415 457 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 CDKN1AP38936 164 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 TMEM50BP56557 158 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 KRTAP10-9P60411 292 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 ARL6IP1Q15041 203 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 P2RY14Q15391 338 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 SMIM21Q3B7S5 101 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 C11orf91Q3C1V1 193 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 SLC22A6Q4U2R8 563 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 TMEM155Q4W5P6 130 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 STUMQ69YW2 141 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 SIGIRRQ6IA17 410 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 PRSS57Q6UWY2 283 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 TGIF2LYQ8IUE0 185 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 CHST4Q8NCG5 386 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 ANGPTL6Q8NI99 470 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 SDSLQ96GA7 329 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 NKX3-1Q99801 234 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-211ENST00000552338 LIME1Q9H400 295 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 NCOR1P1Q9H4R4 102 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 TMEM165Q9HC07 324 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 UFSP2Q9NUQ7 469 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 RBFOX1Q9NWB1 397 aaKnown RBP8.03□□□□□ -1.12
LIMA1-211ENST00000552338 TREM2Q9NZC2 230 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 ZNF222Q9UK12 451 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 ADAM30Q9UKF2 790 aa8.03□□□□□ -1.12
LIMA1-211ENST00000552338 ST3GAL6Q9Y274 331 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms