RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 ZSCAN4Q8NAM6 433 aaPredicted RBP13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 TSPAN14Q8NG11 270 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 TNFAIP8L1Q8WVP5 186 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 EMG1Q92979 244 aaKnown RBP13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 MED30Q96HR3 178 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 NKX3-1Q99801 234 aaPredicted RBP13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 DNTTIP1Q9H147 329 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 TCF7L1Q9HCS4 588 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 OR14J1Q9UGF5 321 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 IGKV1D-17A0A075B6S4 117 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 A0A087WXM4 84 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 IGKV1-12A0A0C4DH73 117 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 A0A1B0GW55 424 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 MAGEA13PA6NCF6 341 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 KIAA1324LA8MWY0 1029 aaPredicted RBP13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 GABRPO00591 440 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 DVL1O14640 695 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 NDUFB3O43676 98 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 IGKV1D-12P01611 117 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 DUX4L2P0CJ85 424 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 DUX4L3P0CJ86 424 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 DUX4L4P0CJ87 422 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 DUX4L5P0CJ88 424 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 DUX4L6P0CJ89 424 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 DUX4L7P0CJ90 424 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 PRDX2P32119 198 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 NPY4RP50391 375 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 IKZF1Q13422 519 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 NEDD8Q15843 81 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 HSD17B12Q53GQ0 312 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 DUX4L9Q6RFH8 374 aaPredicted RBP13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 TMEM91Q6ZNR0 172 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 ZNF788Q6ZQV5 615 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 FAM58AQ8N1B3 248 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 FAM216BQ8N7L0 139 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 GAFA1Q96PS6 74 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 ELL3Q9HB65 397 aaPredicted RBP13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 SMURF1Q9HCE7 757 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 RBFOX1Q9NWB1 397 aaKnown RBP13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 DUX4Q9UBX2 424 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 OR5V1Q9UGF6 321 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 ZNF222Q9UK12 451 aa13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 POLR3KQ9Y2Y1 108 aaPredicted RBP13.5□□□□□ -0.25
CHMP1A-209ENST00000550872 MEGF11A6BM72 1044 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 CCRL2O00421 344 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 SIGLEC5O15389 551 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 KDM4BO94953 1096 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 KNG1P01042 644 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 UCHL1P09936 223 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 CALCBP10092 127 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 PRKACAP17612 351 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 SRMP19623 302 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 PTGFRP43088 359 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 OR3A4PP47883 348 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 CEBPDP49716 269 aaPredicted RBP13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 GP2P55259 537 aaKnown RBP13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 IL13RA1P78552 427 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 FABP5Q01469 135 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 LRRC10Q5BKY1 277 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 FAHD2BQ6P2I3 314 aaPredicted RBP13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 FIP1L1Q6UN15 594 aaKnown RBP13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 C1QL2Q7Z5L3 287 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 JAGN1Q8N5M9 183 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 CD177Q8N6Q3 437 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 PNLDC1Q8NA58 520 aaKnown RBP13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 PXT1Q8NFP0 134 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 ST8SIA4Q92187 359 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 PHYHIPQ92561 330 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 FAHD2AQ96GK7 314 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 FAM192AQ9GZU8 254 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 PPIL3Q9H2H8 161 aaKnown RBP13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 ZNF696Q9H7X3 374 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 MMP26Q9NRE1 261 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 NDUFB11Q9NX14 153 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 ING4Q9UNL4 249 aa13.49□□□□□ -0.25
CHMP1A-209ENST00000550872 LOC105371242A0A075B767 164 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 A0A0G2JMP0 313 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 A0A0X1KG70 313 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 INAFM1C9JVW0 142 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 ARL6IP5O75915 188 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 SFTPBP07988 381 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 SELLP14151 372 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 SNU13P55769 128 aaKnown RBP13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 DGUOKQ16854 277 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 CR1LQ2VPA4 569 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 SYT6Q5T7P8 510 aaPredicted RBP13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 DCAF12L2Q5VW00 463 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 CDH26Q8IXH8 852 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 TMEM185AQ8NFB2 350 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 OR4M2Q8NGB6 313 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 SDSLQ96GA7 329 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 S100A13Q99584 98 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 SLITRK2Q9H156 845 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 RHOFQ9HBH0 211 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 VCX3AQ9NNX9 186 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 HMG20AQ9NP66 347 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 MAB21L2Q9Y586 359 aa13.48□□□□□ -0.25
CHMP1A-209ENST00000550872 PPIAL4CA0A0B4J2A2 164 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 FCN3O75636 299 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 CDRT1O95170 752 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms