RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 GGTLC2Q14390 218 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 SLC10A1Q14973 349 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 WDR5BQ86VZ2 330 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 FAAP24Q9BTP7 215 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 RSPO3Q9BXY4 272 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-215ENST00000544547 MED12Q93074 2177 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 E9PQ18 207 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 TRAPPC2LH3BP13 241 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 SPRY1O43609 319 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-215ENST00000544547 TCF21O43680 179 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 TBX6O95947 436 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-215ENST00000544547 IL2RGP31785 369 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 TAS2R30P59541 319 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 TAS2R60P59551 318 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 CCDC74BQ96LY2 380 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 FOXQ1Q9C009 403 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 CACFD1Q9UGQ2 172 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 CDC14BO60729 498 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 BCKDHBP21953 392 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 BMP5P22003 454 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 HBG1P69891 147 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 HBG2P69892 147 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 BAXQ07812 192 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 TRIM61Q5EBN2 209 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 TMEM240Q5SV17 173 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 GRINAQ7Z429 371 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 RPP25Q9BUL9 199 aaKnown RBP12.61□□□□□ -0.39
LIMS1-215ENST00000544547 SH3BGRL3Q9H299 93 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 OR14J1Q9UGF5 321 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 DTX4Q9Y2E6 619 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 EP300Q09472 2414 aaPredicted RBP12.61□□□□□ -0.39
LIMS1-215ENST00000544547 MDFIC2A0A1B0GVS7 189 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 A0A1W2PNR3 127 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 TNFRSF10CO14798 259 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 MPPED1O15442 326 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 HKR1P10072 659 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 NTF3P20783 257 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 CHRNA7P36544 502 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 RAB31Q13636 194 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 DOK3Q7L591 496 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 ARHGEF39Q8N4T4 335 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 DTD1Q8TEA8 209 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 OBP2BQ9NPH6 170 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 TMEM100Q9NV29 134 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 OBP2AQ9NY56 170 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 TNS1Q9HBL0 1735 aaKnown RBP12.61□□□□□ -0.39
LIMS1-215ENST00000544547 DVL1O14640 695 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 CD46P15529 392 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 PPP1CAP62136 330 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 RUNX1Q01196 453 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 FZD2Q14332 565 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 SHHQ15465 462 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 KHDC3LQ587J8 217 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 LINC00696Q6ZRV3 163 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 PLEKHF2Q9H8W4 249 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 PITPNC1Q9UKF7 332 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 FUT9Q9Y231 359 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 SLC17A4Q9Y2C5 497 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 HEATR5BQ9P2D3 2071 aa12.61□□□□□ -0.39
LIMS1-215ENST00000544547 SHISA8B8ZZ34 492 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 J3QRE1 110 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 P2RY4P51582 365 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 DCAF12Q5T6F0 453 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 BHLHE23Q8NDY6 225 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 MMACHCQ9Y4U1 282 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 OR8U8P0C7N1 319 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 SEC11BP0C7V7 166 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 METTL15P1P0C7V9 234 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 GALR1P47211 349 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 RPS16P62249 146 aaKnown RBP12.6□□□□□ -0.39
LIMS1-215ENST00000544547 SRPXP78539 464 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 CLN3Q13286 438 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 KISS1Q15726 138 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 ZNF260Q3ZCT1 412 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 LINC01590Q5TEZ4 76 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 OR10A7Q8NGE5 316 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 PSMF1Q92530 271 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 ADAT3Q96EY9 351 aaPredicted RBP12.6□□□□□ -0.39
LIMS1-215ENST00000544547 CD1AP06126 327 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 ATP6V0CP27449 155 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 SSR4P51571 173 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 PLGLAQ15195 96 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 VAMP3Q15836 100 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 PNLIPRP3Q17RR3 467 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 WDR25Q64LD2 544 aaPredicted RBP12.6□□□□□ -0.39
LIMS1-215ENST00000544547 ZNF439Q8NDP4 499 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 ARV1Q9H2C2 271 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 C5orf66Q9H5L9 145 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 SLC2A8Q9NY64 477 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 SLCO1B1Q9Y6L6 691 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 H0YIZ8 118 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 RER1O15258 196 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 CD27P26842 260 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 HSD17B7P56937 341 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 TMEM196Q5HYL7 178 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 SLC26A10Q8NG04 563 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 BAHD1Q8TBE0 780 aaPredicted RBP12.6□□□□□ -0.39
LIMS1-215ENST00000544547 AQP10Q96PS8 301 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 DDA1Q9BW61 102 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 GPR132Q9UNW8 380 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms