RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, human

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP28-210	ENST00000542033	JCHAIN	P01591	159 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	IGHG4	P01861	327 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	HLA-DQB1	P01920	261 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	C1QC	P02747	245 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	SERPIND1	P05546	499 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	SNRPC	P09234	159 aa	Known RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	ALPI	P09923	528 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	UCHL1	P09936	223 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	HSD17B1	P14061	328 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	ZNF14	P17017	642 aa	Predicted RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	AK4	P27144	223 aa	Predicted RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	PSMB5	P28074	263 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	ABCC1	P33527	1531 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	RPA3	P35244	121 aa	Predicted RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	FLT4	P35916	1363 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	COIL	P38432	576 aa	Predicted RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	CEACAM3	P40198	252 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	RPS9	P46781	194 aa	Known RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	NOV	P48745	357 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	ZNF142	P52746	1687 aa	Predicted RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	MAX	P61244	160 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	TIMM10	P62072	90 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	NCS1	P62166	190 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	SNRPD2	P62316	118 aa	Known RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	HBA1	P69905	142 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	FAM3A	P98173	230 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	EWSR1	Q01844	656 aa	Known RBP eCLIP	2.55	□□□□□ -2
USP28-210	ENST00000542033	AES	Q08117	197 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	BST1	Q10588	318 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	SKP2	Q13309	424 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	ELAVL3	Q14576	367 aa	Known RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	JOSD1	Q15040	202 aa	Predicted RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	HMGN3	Q15651	99 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	NSDHL	Q15738	373 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	NEDD8	Q15843	81 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	CEACAM21	Q3KPI0	293 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	TMEM176B	Q3YBM2	270 aa	Predicted RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	GGTA1P	Q4G0N0	100 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	SLC22A6	Q4U2R8	563 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	MORN2	Q502X0	79 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	MEST	Q5EB52	335 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	XKR7	Q5GH72	579 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	NEXMIF	Q5QGS0	1516 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	FAM74A1	Q5RGS3	127 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	NCMAP	Q5T1S8	102 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	SDHAF4	Q5VUM1	108 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	SAMD13	Q5VXD3	122 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	ADNP2	Q6IQ32	1131 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	TMEM107	Q6UX40	140 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	ADAMTSL5	Q6ZMM2	481 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	C10orf71	Q711Q0	1435 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	SSX6	Q7RTT6	188 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	ZFYVE16	Q7Z3T8	1539 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	C6orf120	Q7Z4R8	191 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	MOB3B	Q86TA1	216 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	ZNF546	Q86UE3	836 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	SERPINA9	Q86WD7	417 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	H1FOO	Q8IZA3	346 aa	Predicted RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	TMEM123	Q8N131	208 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	LGI3	Q8N145	548 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	TMEM156	Q8N614	296 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	ZNRF1	Q8ND25	227 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	FBXO36	Q8NEA4	188 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	PROKR2	Q8NFJ6	384 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	OR4D6	Q8NGJ1	314 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	OR4D5	Q8NGN0	318 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	OR13C4	Q8NGS5	318 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	OR9A4	Q8NGU2	314 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	OR5AK3P	Q8NH89	298 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	M1AP	Q8TC57	530 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	CASTOR1	Q8WTX7	329 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	PHIP	Q8WWQ0	1821 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	TOPBP1	Q92547	1522 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	TMEM159	Q96B96	161 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	RPUSD4	Q96CM3	377 aa	Known RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	ASB9	Q96DX5	294 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	YIPF6	Q96EC8	236 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	CCDC126	Q96EE4	140 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	CPNE2	Q96FN4	548 aa	Predicted RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	RSG1	Q9BU20	258 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	SEC11C	Q9BY50	192 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	DUSP16	Q9BY84	665 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	LIME1	Q9H400	295 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	BEX1	Q9HBH7	125 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	PLEKHJ1	Q9NW61	149 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	TAS2R13	Q9NYV9	303 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	AHSP	Q9NZD4	102 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	OPTC	Q9UBM4	332 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	VPS29	Q9UBQ0	182 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	ZNF223	Q9UK11	482 aa	Predicted RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	UBQLN1	Q9UMX0	589 aa	Known RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	TFR2	Q9UP52	801 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	FLVCR2	Q9UPI3	526 aa		2.55	□□□□□ -2
USP28-210	ENST00000542033	RBM7	Q9Y580	266 aa	Known RBP	2.55	□□□□□ -2
USP28-210	ENST00000542033	CROCC	Q5TZA2	2017 aa		2.54	□□□□□ -2
USP28-210	ENST00000542033	MTCL1	Q9Y4B5	1905 aa	Known RBP	2.54	□□□□□ -2
USP28-210	ENST00000542033	DENND4A	Q7Z401	1863 aa		2.54	□□□□□ -2
USP28-210	ENST00000542033	NALCN	Q8IZF0	1738 aa		2.54	□□□□□ -2
USP28-210	ENST00000542033	CLTC	Q00610	1675 aa	Known RBP	2.54	□□□□□ -2
USP28-210	ENST00000542033	PIK3C2B	O00750	1634 aa		2.54	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms