RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 Q6ZS92 163 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 CXorf67Q86X51 503 aaPredicted RBP12.45□□□□□ -0.42
CLIP1-216ENST00000541410 OR5AP2Q8NGF4 316 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 WNT2BQ93097 391 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 TRAF4Q9BUZ4 470 aaPredicted RBP12.45□□□□□ -0.42
CLIP1-216ENST00000541410 IRF2BPLQ9H1B7 796 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 PPA2Q9H2U2 334 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 CDH20Q9HBT6 801 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 C9orf170A2RU37 121 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 OR5H14A6NHG9 310 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 ANKRD30BLA7E2S9 258 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 TNFSF13O75888 250 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 TBPP20226 339 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 GLRA1P23415 457 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 CBX5P45973 191 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 SLC9A3R2Q15599 337 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 LRRC37A5PQ49AS3 106 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 VAX1Q5SQQ9 334 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 AADACL3Q5VUY0 350 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 Q6ZPA2 131 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 LYG2Q86SG7 212 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 C17orf78Q8N4C9 275 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 OR8H1Q8NGG4 311 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 HIST1H2AAQ96QV6 131 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 GON7Q9BXV9 100 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 FXYD6-FXYD2A0A087WZ82 144 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 SMPD2O60906 423 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 CST4P01036 141 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 ARPC4P59998 168 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 RAP2BP61225 183 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 PPP1CBP62140 327 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 SORDQ00796 357 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 ZBTB37Q5TC79 503 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 ZDHHC22Q8N966 263 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 ELMOD3Q96FG2 381 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 ABHD17AQ96GS6 310 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 TECTBQ96PL2 329 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 DPCDQ9BVM2 203 aaPredicted RBP12.44□□□□□ -0.42
CLIP1-216ENST00000541410 FXYD6Q9H0Q3 95 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 ZNF442Q9H7R0 627 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 ZNF71Q9NQZ8 489 aaPredicted RBP12.44□□□□□ -0.42
CLIP1-216ENST00000541410 FZR1Q9UM11 496 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 ARPC5O15511 151 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 RHBDL1O75783 438 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 KNG1P01042 644 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 CXCL2P19875 107 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 MPZP25189 248 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 RTL6Q6ICC9 239 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 OVCH2Q7RTZ1 564 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 SLC25A40Q8TBP6 338 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 PCNPQ8WW12 178 aaKnown RBP12.44□□□□□ -0.42
CLIP1-216ENST00000541410 OR5P3Q8WZ94 311 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 TMEM230Q96A57 120 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 STARD4Q96DR4 205 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 MARS2Q96GW9 593 aaKnown RBP12.44□□□□□ -0.42
CLIP1-216ENST00000541410 GPR137Q96N19 417 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 LIME1Q9H400 295 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 SPTBN4Q9H254 2564 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 KIAA2026Q5HYC2 2103 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 PTPRQQ9UMZ3 2332 aa12.44□□□□□ -0.42
CLIP1-216ENST00000541410 AHRRA9YTQ3 701 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 WDR1O75083 606 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 FCGR3AP08637 254 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 HOXC12P31275 282 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 TAS2R46P59540 309 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 GRK1Q15835 563 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 FAM219AQ8IW50 185 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 ARRDC1Q8N5I2 433 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 WDR31Q8NA23 367 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 OR5L1Q8NGL2 311 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 OR1J1Q8NGS3 322 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 OR6K3Q8NGY3 331 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 ZNF2Q9BSG1 426 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-216ENST00000541410 GPR132Q9UNW8 380 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 PROB1E7EW31 1015 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 MPC2O95563 127 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 HTR2BP41595 481 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 HOXA4Q00056 320 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-216ENST00000541410 ZMYND11Q15326 602 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 ACTBL2Q562R1 376 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 NSUN5P2Q63ZY6 315 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 EXTL1Q92935 676 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 RTBDNQ9BSG5 229 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-216ENST00000541410 PDCD10Q9BUL8 212 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 IL36GQ9NZH8 169 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 ANXA10Q9UJ72 324 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 HSF4Q9ULV5 492 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 NBEAQ8NFP9 2946 aa12.43□□□□□ -0.42
CLIP1-216ENST00000541410 PDCD6O75340 191 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 PRKACAP17612 351 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 MPV17P39210 176 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 AP2S1P53680 142 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-216ENST00000541410 SLC22A25Q6T423 547 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 DPPA2Q7Z7J5 298 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 OR5A2Q8NGI9 324 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 HEXA-AS1Q9H8Q6 139 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 TMEM165Q9HC07 324 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 PROCRQ9UNN8 238 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 OSGIN2Q9Y236 505 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 TP53TG5Q9Y2B4 290 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms