RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 GNRHR2Q96P88 292 aa11.39□□□□□ -0.59
MSH6-210ENST00000540021 C8orf33Q9H7E9 229 aaPredicted RBP11.39□□□□□ -0.59
MSH6-210ENST00000540021 A0A1W2PR80 420 aa11.39□□□□□ -0.59
MSH6-210ENST00000540021 H0YL77 283 aa11.39□□□□□ -0.59
MSH6-210ENST00000540021 H3BQ15 152 aa11.39□□□□□ -0.59
MSH6-210ENST00000540021 IAPPP10997 89 aa11.39□□□□□ -0.59
MSH6-210ENST00000540021 B4GALT1P15291 398 aa11.39□□□□□ -0.59
MSH6-210ENST00000540021 NOVA1P51513 510 aaKnown RBP11.39□□□□□ -0.59
MSH6-210ENST00000540021 BATFQ16520 125 aa11.39□□□□□ -0.59
MSH6-210ENST00000540021 DPPA2Q7Z7J5 298 aa11.39□□□□□ -0.59
MSH6-210ENST00000540021 OR2C3Q8N628 320 aa11.39□□□□□ -0.59
MSH6-210ENST00000540021 BCO1Q9HAY6 547 aa11.39□□□□□ -0.59
MSH6-210ENST00000540021 SLC2A9Q9NRM0 540 aa11.39□□□□□ -0.59
MSH6-210ENST00000540021 RBFOX3A6NFN3 312 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 GEMIN2O14893 280 aaKnown RBP11.38□□□□□ -0.59
MSH6-210ENST00000540021 TSPAN2O60636 221 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 CYTIPO60759 359 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 MELTFP08582 738 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 LINC00271P0C7V0 271 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 ECI1P42126 302 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 FGF8P55075 233 aaPredicted RBP11.38□□□□□ -0.59
MSH6-210ENST00000540021 PIGYQ3MUY2 71 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 RBMXL1Q96E39 390 aaKnown RBP11.38□□□□□ -0.59
MSH6-210ENST00000540021 OXGR1Q96P68 337 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 OR51M1Q9H341 326 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 A0A0A6YYD4 124 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 F8VVB4 439 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 F8VWA3 439 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 DEDDO75618 318 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 ACKR3P25106 362 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 OR52M1Q8NGK5 317 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 CABLES2Q9BTV7 478 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 CACFD1Q9UGQ2 172 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 MYO7BQ6PIF6 2116 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 DIDO1Q9BTC0 2240 aaKnown RBP11.38□□□□□ -0.59
MSH6-210ENST00000540021 XIRP2A4UGR9 3374 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 CD300LBA8K4G0 201 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 DHRS3O75911 302 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 NRASP01111 189 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 DLK1P80370 383 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 OR8G2PQ6IF36 304 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 MRPL41Q8IXM3 137 aaKnown RBP11.38□□□□□ -0.59
MSH6-210ENST00000540021 C1orf87Q8N0U7 546 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 RPUSD4Q96CM3 377 aaKnown RBP11.38□□□□□ -0.59
MSH6-210ENST00000540021 BSCL2Q96G97 398 aaPredicted RBP11.38□□□□□ -0.59
MSH6-210ENST00000540021 LURAP1Q96LR2 239 aa11.38□□□□□ -0.59
MSH6-210ENST00000540021 TPRP12270 2363 aaKnown RBP11.38□□□□□ -0.59
MSH6-210ENST00000540021 ADAM20O43506 726 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 KLK3P07288 261 aaPredicted RBP11.37□□□□□ -0.59
MSH6-210ENST00000540021 CTSDP07339 412 aaPredicted RBP11.37□□□□□ -0.59
MSH6-210ENST00000540021 FAM157CP0CG43 387 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 MNX1P50219 401 aaPredicted RBP11.37□□□□□ -0.59
MSH6-210ENST00000540021 SHBQ15464 509 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 SHHQ15465 462 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 SMIM8Q96KF7 97 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 SNX22Q96L94 193 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 CCDC187A0A096LP49 1063 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 HS3ST1O14792 307 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 FOSL2P15408 326 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 SNCAP37840 140 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 MLF1P58340 268 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 RPS16P62249 146 aaKnown RBP11.37□□□□□ -0.59
MSH6-210ENST00000540021 NSUN5P2Q63ZY6 315 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 OR5AS1Q8N127 324 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 ZNF784Q8NCA9 323 aaPredicted RBP11.37□□□□□ -0.59
MSH6-210ENST00000540021 ZNF319Q9P2F9 582 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 MCTS1Q9ULC4 181 aaKnown RBP11.37□□□□□ -0.59
MSH6-210ENST00000540021 NKX2-6A6NCS4 301 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 ZNF705FA8MVS1 300 aaPredicted RBP11.37□□□□□ -0.59
MSH6-210ENST00000540021 DHHO43323 396 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 RAMP1O60894 148 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 ZNF705DP0CH99 300 aaPredicted RBP11.37□□□□□ -0.59
MSH6-210ENST00000540021 ZNF705BP0CI00 300 aaPredicted RBP11.37□□□□□ -0.59
MSH6-210ENST00000540021 EDN3P14138 238 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 ATP6V0CP27449 155 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 SUPT4H1P63272 117 aaKnown RBP11.37□□□□□ -0.59
MSH6-210ENST00000540021 CYB561D1Q8N8Q1 229 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 RDH5Q92781 318 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 RAB39BQ96DA2 213 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 TVP23CQ96ET8 276 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 MRGPRX4Q96LA9 322 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 GPR61Q9BZJ8 451 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 RFNGQ9Y644 331 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 POMT1Q9Y6A1 747 aa11.37□□□□□ -0.59
MSH6-210ENST00000540021 ATXN7O15265 892 aaPredicted RBP11.36□□□□□ -0.59
MSH6-210ENST00000540021 NDUFS6O75380 124 aaKnown RBP11.36□□□□□ -0.59
MSH6-210ENST00000540021 IGLV3-21P80748 117 aaPredicted RBP11.36□□□□□ -0.59
MSH6-210ENST00000540021 TMEM267Q0VDI3 215 aaPredicted RBP11.36□□□□□ -0.59
MSH6-210ENST00000540021 FNDC7Q5VTL7 733 aa11.36□□□□□ -0.59
MSH6-210ENST00000540021 C1orf53Q5VUE5 145 aa11.36□□□□□ -0.59
MSH6-210ENST00000540021 YRDCQ86U90 279 aaKnown RBP11.36□□□□□ -0.59
MSH6-210ENST00000540021 PP6455Q8WZ26 134 aa11.36□□□□□ -0.59
MSH6-210ENST00000540021 SDSLQ96GA7 329 aa11.36□□□□□ -0.59
MSH6-210ENST00000540021 A0A1W2PQD3 144 aa11.36□□□□□ -0.59
MSH6-210ENST00000540021 IFNA1P01562 189 aa11.36□□□□□ -0.59
MSH6-210ENST00000540021 TRGC2P03986 189 aa11.36□□□□□ -0.59
MSH6-210ENST00000540021 CFIP05156 583 aa11.36□□□□□ -0.59
MSH6-210ENST00000540021 HLA-GP17693 338 aa11.36□□□□□ -0.59
MSH6-210ENST00000540021 THBS4P35443 961 aa11.36□□□□□ -0.59
MSH6-210ENST00000540021 EWSR1Q01844 656 aaKnown RBP eCLIP11.36□□□□□ -0.595e-7■■■■□ 21.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms