RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 TSTD1Q8NFU3 115 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 PP6455Q8WZ26 134 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF799Q96GE5 643 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 ABHD14AQ9BUJ0 271 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 SLC2A9Q9NRM0 540 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 IGHV3-15A0A0B4J1V0 119 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 CCL1P22362 96 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 VAMP2P63027 116 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 DEFA6Q01524 100 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF343Q6P1L6 599 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 FAM180AQ6UWF9 173 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF600Q6ZNG1 722 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 LIAT1Q6ZQX7 453 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 TMEM217Q8N7C4 229 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 POC1BQ8TC44 478 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 CHST5Q9GZS9 411 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 ADAM10O14672 748 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 OR2J2O76002 312 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 CCL20P78556 96 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 MRPL38Q96DV4 380 aaKnown RBP9.82□□□□□ -0.84
SYNE1-237ENST00000539504 SUCNR1Q9BXA5 334 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 GAR1Q9NY12 217 aaKnown RBP9.82□□□□□ -0.84
SYNE1-237ENST00000539504 PISDQ9UG56 409 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 SLC7A11Q9UPY5 501 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 RALGAPA1Q6GYQ0 2036 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 IGHV1OR21-1A0A087WYE8 117 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 RBFOX3A6NFN3 312 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 H3BQ15 152 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 FBP1P09467 338 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 HNRNPKP61978 463 aaKnown RBP eCLIP9.82□□□□□ -0.84
SYNE1-237ENST00000539504 EWSR1Q01844 656 aaKnown RBP eCLIP9.82□□□□□ -0.84
SYNE1-237ENST00000539504 KDF1Q8NAX2 398 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-237ENST00000539504 OR10D4PQ8NGN7 298 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 OR14L1PQ8NHC6 308 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 TM2D1Q9BX74 207 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 UNKLQ9H9P5 680 aaKnown RBP9.82□□□□□ -0.84
SYNE1-237ENST00000539504 UCK1Q9HA47 277 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 UBE2J1Q9Y385 318 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-237ENST00000539504 LIPGQ9Y5X9 500 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 THADAQ6YHU6 1953 aa9.82□□□□□ -0.84
SYNE1-237ENST00000539504 H0YL77 283 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 YKT6O15498 198 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 HSPA12AO43301 675 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 PNLIPP16233 465 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 IL13RA2Q14627 380 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 SLC25A24Q6NUK1 477 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF383Q8NA42 475 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 RAB39BQ96DA2 213 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 BORCS8Q96FH0 119 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 Q96M66 194 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF442Q9H7R0 627 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 SPEGQ15772 3267 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 TRANK1O15050 2925 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 CCDC187A0A096LP49 1063 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 RRP8O43159 456 aaKnown RBP9.81□□□□□ -0.84
SYNE1-237ENST00000539504 CST7O76096 145 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 ATP6V0CP27449 155 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 PMELP40967 661 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 SUCLG1P53597 346 aaKnown RBP9.81□□□□□ -0.84
SYNE1-237ENST00000539504 STARD6P59095 220 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF239Q16600 458 aaKnown RBP9.81□□□□□ -0.84
SYNE1-237ENST00000539504 ANKRD37Q7Z713 158 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 DTX1Q86Y01 620 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 OR2C3Q8N628 320 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 PLPP5Q8NEB5 264 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 OR5L2Q8NGL0 311 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 SCRT1Q9BWW7 348 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 DOK5Q9P104 306 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 COL4A2P08572 1712 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 FOXI3A8MTJ6 420 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-237ENST00000539504 NPIPA2E9PIF3 369 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 NPIPA3F8WFD2 350 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 SSSCA1O60232 199 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 LCATP04180 440 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF84P51523 738 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF266Q14584 549 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 SLC35G3Q8N808 338 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF610Q8N9Z0 462 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 SPTSSAQ969W0 71 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 MARS2Q96GW9 593 aaKnown RBP9.81□□□□□ -0.84
SYNE1-237ENST00000539504 ARV1Q9H2C2 271 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF286AQ9HBT8 521 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 HDGFL3Q9Y3E1 203 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 SZT2Q5T011 3432 aa9.81□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF724A8MTY0 619 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 LMO7DNF2Z398 122 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 H3BMH7 237 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 GEMIN2O14893 280 aaKnown RBP9.8□□□□□ -0.84
SYNE1-237ENST00000539504 JMJD7P0C870 316 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 MSX1P28360 303 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 NKX2-1P43699 371 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-237ENST00000539504 HAAOP46952 286 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 PIGYQ3MUY2 71 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 HEPN1Q6WQI6 88 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF695Q8IW36 515 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 FBXL14Q8N1E6 418 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 CCDC71LQ8N9Z2 235 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 GPR27Q9NS67 375 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 CLEC1BQ9P126 229 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 ZDHHC8Q9ULC8 765 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms