RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 TK1P04183 234 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 PRKACBP22694 351 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 NPBWR2P48146 333 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 POU3F4P49335 361 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 GBX2P52951 348 aaPredicted RBP12.11□□□□□ -0.47
USP28-204ENST00000537642 MTCP1P56278 107 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 RPL31P62899 125 aaKnown RBP12.11□□□□□ -0.47
USP28-204ENST00000537642 ADARB1P78563 741 aaKnown RBP12.11□□□□□ -0.47
USP28-204ENST00000537642 COL10A1Q03692 680 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 FOXL1Q12952 345 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 MRPL28Q13084 256 aaKnown RBP12.11□□□□□ -0.47
USP28-204ENST00000537642 TTC23Q5W5X9 447 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 TMEM200BQ69YZ2 307 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 HCP5Q6MZN7 132 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 LHFPL2Q6ZUX7 228 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 RNF144BQ7Z419 303 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 LDLRAD3Q86YD5 345 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 PNKDQ8N490 385 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 TMEM86BQ8N661 226 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 OR4M1Q8NGD0 313 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 SPSB1Q96BD6 273 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 OPALINQ96PE5 141 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 PDCD1LG2Q9BQ51 273 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 CHIAQ9BZP6 476 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 FAM234AQ9H0X4 552 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 IL36RNQ9UBH0 155 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 TMEM212A6NML5 194 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 H0YAE9 185 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 K7N7A8 449 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 SPRY1O43609 319 aaPredicted RBP12.1□□□□□ -0.47
USP28-204ENST00000537642 ZNF737O75373 536 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 MT-ND2P03891 347 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 CHRM2P08172 466 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 CCDC159P0C7I6 412 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 BCL3P20749 454 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 ETV1P50549 477 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 GTF2A1P52655 376 aaPredicted RBP12.1□□□□□ -0.47
USP28-204ENST00000537642 BLMHQ13867 455 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 NCR3LG1Q68D85 454 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 CRIP3Q6Q6R5 217 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 MKXQ8IYA7 352 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 DHRSXQ8N5I4 330 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 C11orf42Q8N5U0 333 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 ASCC1Q8N9N2 400 aaKnown RBP12.1□□□□□ -0.47
USP28-204ENST00000537642 OR13C9Q8NGT0 318 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 OR5AK2Q8NH90 309 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 SSMEM1Q8WWF3 244 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 EMG1Q92979 244 aaKnown RBP12.1□□□□□ -0.47
USP28-204ENST00000537642 RFT1Q96AA3 541 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 SPACA5Q96QH8 159 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 ZCCHC4Q9H5U6 513 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 RBFOX1Q9NWB1 397 aaKnown RBP12.1□□□□□ -0.47
USP28-204ENST00000537642 POMT1Q9Y6A1 747 aa12.1□□□□□ -0.47
USP28-204ENST00000537642 TRBV2A0A0J9YWF9 115 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 TMEM82A0PJX8 343 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 FAM181BA6NEQ2 426 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 CASQ2O14958 399 aaPredicted RBP12.09□□□□□ -0.47
USP28-204ENST00000537642 IGHV4-59P01825 116 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 CCL3L1P16619 93 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 EEF1B2P24534 225 aaKnown RBP12.09□□□□□ -0.47
USP28-204ENST00000537642 DCKP27707 260 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 IER3P46695 156 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 UBE2E1P51965 193 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 PDZK1IP1Q13113 114 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 ZNF273Q14593 569 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 OGFRL1Q5TC84 451 aaPredicted RBP12.09□□□□□ -0.47
USP28-204ENST00000537642 OR2G6Q5TZ20 316 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 XAF1Q6GPH4 301 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 FIP1L1Q6UN15 594 aaKnown RBP12.09□□□□□ -0.47
USP28-204ENST00000537642 Q8IYB0 196 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 SETD9Q8NE22 299 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 OR5D13Q8NGL4 314 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 COMMD4Q9H0A8 199 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 SEBOXQ9HB31 216 aaPredicted RBP12.09□□□□□ -0.47
USP28-204ENST00000537642 CAB39Q9Y376 341 aaPredicted RBP12.09□□□□□ -0.47
USP28-204ENST00000537642 FAM96BQ9Y3D0 163 aa12.09□□□□□ -0.47
USP28-204ENST00000537642 IGKV1-12A0A0C4DH73 117 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 IRGMA1A4Y4 181 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 ANGPTL7O43827 346 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 ALX3O95076 343 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 HAND1O96004 215 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 CYB5AP00167 134 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 IGKV1D-12P01611 117 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 RPSAP08865 295 aaKnown RBP12.08□□□□□ -0.48
USP28-204ENST00000537642 FBP1P09467 338 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 OCM2P0CE71 109 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 OCMP0CE72 109 aaPredicted RBP12.08□□□□□ -0.48
USP28-204ENST00000537642 CALCBP10092 127 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 PIPP12273 146 aaPredicted RBP12.08□□□□□ -0.48
USP28-204ENST00000537642 DUSP1P28562 367 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 SAA4P35542 130 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 C17orf107Q6ZR85 190 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 FAM58AQ8N1B3 248 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 PARP16Q8N5Y8 322 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 TBC1D15Q8TC07 691 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 RPS4Y2Q8TD47 263 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 HAVCR2Q8TDQ0 301 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 RGP1Q92546 391 aaPredicted RBP12.08□□□□□ -0.48
USP28-204ENST00000537642 SNX22Q96L94 193 aa12.08□□□□□ -0.48
USP28-204ENST00000537642 ZNRD1Q9P1U0 126 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms