RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 DPAGT1Q9H3H5 408 aa16.92■□□□□ 0.3
VPS28-206ENST00000526734 ELL3Q9HB65 397 aaPredicted RBP16.92■□□□□ 0.3
VPS28-206ENST00000526734 AMBNQ9NP70 447 aa16.92■□□□□ 0.3
VPS28-206ENST00000526734 FGF20Q9NP95 211 aaPredicted RBP16.92■□□□□ 0.3
VPS28-206ENST00000526734 MTCH1Q9NZJ7 389 aa16.92■□□□□ 0.3
VPS28-206ENST00000526734 OR14J1Q9UGF5 321 aa16.92■□□□□ 0.3
VPS28-206ENST00000526734 A0A0U1RQK1 487 aa16.91■□□□□ 0.3
VPS28-206ENST00000526734 H0YAE9 185 aa16.91■□□□□ 0.3
VPS28-206ENST00000526734 RNASEK-C17orf49H0YIS7 233 aa16.91■□□□□ 0.3
VPS28-206ENST00000526734 NPFFO15130 113 aa16.91■□□□□ 0.3
VPS28-206ENST00000526734 TK1P04183 234 aa16.91■□□□□ 0.3
VPS28-206ENST00000526734 CRYBA1P05813 215 aa16.91■□□□□ 0.3
VPS28-206ENST00000526734 DCKP27707 260 aa16.91■□□□□ 0.3
VPS28-206ENST00000526734 MTCP1P56278 107 aa16.91■□□□□ 0.3
VPS28-206ENST00000526734 IL18R1Q13478 541 aa16.91■□□□□ 0.3
VPS28-206ENST00000526734 PIP4P2Q8N4L2 257 aa16.91■□□□□ 0.3
VPS28-206ENST00000526734 OPALINQ96PE5 141 aa16.91■□□□□ 0.3
VPS28-206ENST00000526734 ZNF649Q9BS31 505 aa16.91■□□□□ 0.3
VPS28-206ENST00000526734 RHOFQ9HBH0 211 aa16.91■□□□□ 0.3
VPS28-206ENST00000526734 SF3B6Q9Y3B4 125 aaKnown RBP16.91■□□□□ 0.3
VPS28-206ENST00000526734 IGKV1-9A0A0C4DH69 117 aa16.9■□□□□ 0.3
VPS28-206ENST00000526734 TRBV2A0A0J9YWF9 115 aa16.9■□□□□ 0.3
VPS28-206ENST00000526734 A0A1B0GUS0 222 aa16.9■□□□□ 0.3
VPS28-206ENST00000526734 POM121CA8CG34 1229 aa16.9■□□□□ 0.3
VPS28-206ENST00000526734 K7N7A8 449 aa16.9■□□□□ 0.3
VPS28-206ENST00000526734 WBP4O75554 376 aaKnown RBP16.9■□□□□ 0.3
VPS28-206ENST00000526734 ALX3O95076 343 aa16.9■□□□□ 0.3
VPS28-206ENST00000526734 RCN1Q15293 331 aa16.9■□□□□ 0.3
VPS28-206ENST00000526734 ZNF691Q5VV52 312 aa16.9■□□□□ 0.3
VPS28-206ENST00000526734 OR5AK2Q8NH90 309 aa16.9■□□□□ 0.3
VPS28-206ENST00000526734 EMG1Q92979 244 aaKnown RBP16.9■□□□□ 0.3
VPS28-206ENST00000526734 SLAMF9Q96A28 289 aa16.9■□□□□ 0.3
VPS28-206ENST00000526734 ZNF747Q9BV97 191 aa16.9■□□□□ 0.3
VPS28-206ENST00000526734 ISG20L2Q9H9L3 353 aaKnown RBP16.9■□□□□ 0.3
VPS28-206ENST00000526734 C19orf12Q9NSK7 152 aa16.9■□□□□ 0.3
VPS28-206ENST00000526734 BTBD17A6NE02 478 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 POU3F4P49335 361 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 CEBPDP49716 269 aaPredicted RBP16.89■□□□□ 0.29
VPS28-206ENST00000526734 MED21Q13503 144 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 CCDC58Q4VC31 144 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 MIDNQ504T8 468 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 SPIN3Q5JUX0 258 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 SHISA2Q6UWI4 295 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 TMPRSS11AQ6ZMR5 421 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 PDZD9Q8IXQ8 264 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 DHRSXQ8N5I4 330 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 ASCC1Q8N9N2 400 aaKnown RBP16.89■□□□□ 0.29
VPS28-206ENST00000526734 OR5D14Q8NGL3 314 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 DYRK2Q92630 601 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 CPNE2Q96FN4 548 aaPredicted RBP16.89■□□□□ 0.29
VPS28-206ENST00000526734 ZCCHC4Q9H5U6 513 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 HEXA-AS1Q9H8Q6 139 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 GLS2Q9UI32 602 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 MMP24Q9Y5R2 645 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 HSPE1-MOB4S4R3N1 261 aa16.89■□□□□ 0.29
VPS28-206ENST00000526734 ZNF737O75373 536 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 ZFPL1O95159 310 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 PAHP00439 452 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 IER3P46695 156 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 COL10A1Q03692 680 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 PDZK1IP1Q13113 114 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 LRRC36Q1X8D7 754 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 SERPINA12Q8IW75 414 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 SAXO1Q8IYX7 474 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 OR8H2Q8N162 312 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 PARP16Q8N5Y8 322 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 OR51A4Q8NGJ6 313 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 OR13C9Q8NGT0 318 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 OR10AC1Q8NH08 325 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 SGMS2Q8NHU3 365 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 CYGBQ8WWM9 190 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 SNX22Q96L94 193 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 CHIAQ9BZP6 476 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 ZNRD1Q9P1U0 126 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 DHDHQ9UQ10 334 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 PCDHGB5Q9Y5G0 923 aa16.88■□□□□ 0.29
VPS28-206ENST00000526734 FAM181BA6NEQ2 426 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 NDUFA7O95182 113 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 RBP4P02753 201 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 LIMS3P0CW19 117 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 LIMS4P0CW20 117 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 MYL12AP19105 171 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 PEX2P28328 305 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 SAA4P35542 130 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 MEF2CQ06413 473 aaPredicted RBP16.87■□□□□ 0.29
VPS28-206ENST00000526734 KLRD1Q13241 179 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 TMEM200BQ69YZ2 307 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 GDPD3Q7L5L3 318 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 FAM58AQ8N1B3 248 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 BATF2Q8N1L9 274 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 OR4F5Q8NH21 305 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 PPP1R35Q8TAP8 253 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 VCXQ9H320 206 aa16.87■□□□□ 0.29
VPS28-206ENST00000526734 DIMT1Q9UNQ2 313 aaKnown RBP16.87■□□□□ 0.29
VPS28-206ENST00000526734 EXOSC1Q9Y3B2 195 aaKnown RBP16.87■□□□□ 0.29
VPS28-206ENST00000526734 F8VVB4 439 aa16.86■□□□□ 0.29
VPS28-206ENST00000526734 F8VWA3 439 aa16.86■□□□□ 0.29
VPS28-206ENST00000526734 CASQ2O14958 399 aaPredicted RBP16.86■□□□□ 0.29
VPS28-206ENST00000526734 SULT1B1O43704 296 aa16.86■□□□□ 0.29
VPS28-206ENST00000526734 HAND1O96004 215 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms