RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 SDF2L1Q9HCN8 221 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 PILRAQ9UKJ1 303 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 ZFP30Q9Y2G7 519 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 GVINP1Q7Z2Y8 2422 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 AQP7O14520 342 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 SYNGR4O95473 234 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 SEMA4FO95754 770 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 UCP3P55916 312 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 RPL15P61313 204 aaKnown RBP7.35□□□□□ -1.23
CSMD1-213ENST00000523488 ZNF92Q03936 586 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 FZD2Q14332 565 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 PLAC9Q5JTB6 97 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 COL5A1-AS1Q5SY13 56 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 LEMD1Q68G75 181 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 TEX38Q6PEX7 206 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 TCEAL8Q8IYN2 117 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 ORAOV1Q8WV07 137 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 AMELYQ99218 206 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.35□□□□□ -1.23
CSMD1-213ENST00000523488 R4GMQ9 66 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 SPTBN2O15020 2390 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 TRIOBPQ9H2D6 2365 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 CHD3Q12873 2000 aaKnown RBP7.34□□□□□ -1.23
CSMD1-213ENST00000523488 TRAV39A0A0B4J263 110 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 TCRBV21S2A2A0A5A6 115 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 IGKV1D-16P01601 117 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 VSIG8P0DPA2 414 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 CYBAP13498 195 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 IRF2P14316 349 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 CCL7P80098 99 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 CDK3Q00526 305 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 COL10A1Q03692 680 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 C1QL3Q5VWW1 255 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 TMEM215Q68D42 235 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 SMIM15Q7Z3B0 74 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 VN1R4Q7Z5H5 301 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 SULF2Q8IWU5 870 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 ZNF440Q8IYI8 595 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 METTL27Q8N6F8 245 aaPredicted RBP7.34□□□□□ -1.23
CSMD1-213ENST00000523488 Q8N976 141 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 ADPRHL1Q8NDY3 354 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 MAGT1Q9H0U3 335 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 LPAR2Q9HBW0 351 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 PADI1Q9ULC6 663 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 CYR61O00622 381 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 LILRB3O75022 631 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 NPIPB7O75200 414 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 OMGP23515 440 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 OR10J1P30954 320 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 CCL20P78556 96 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 TMEM187Q14656 261 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 EXOSC7Q15024 291 aaKnown RBP7.34□□□□□ -1.23
CSMD1-213ENST00000523488 SRSF7Q16629 238 aaKnown RBP eCLIP7.34□□□□□ -1.23
CSMD1-213ENST00000523488 TMEM249Q2WGJ8 235 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 FBXO42Q6P3S6 717 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 Q6ZS49 121 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 COMMD2Q86X83 199 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 NPAS4Q8IUM7 802 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 NUS1Q96E22 293 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 TBX15Q96SF7 602 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 GPER1Q99527 375 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 TBL1XR1Q9BZK7 514 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 S1PR5Q9H228 398 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 ELL3Q9HB65 397 aaPredicted RBP7.34□□□□□ -1.23
CSMD1-213ENST00000523488 SERINC1Q9NRX5 453 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 FOXJ2Q9P0K8 574 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 SPACA6W5XKT8 324 aa7.34□□□□□ -1.23
CSMD1-213ENST00000523488 PHF3Q92576 2039 aaKnown RBP7.34□□□□□ -1.23
CSMD1-213ENST00000523488 TIMP1P01033 207 aa7.34□□□□□ -1.24
CSMD1-213ENST00000523488 CGAP01215 116 aa7.34□□□□□ -1.24
CSMD1-213ENST00000523488 CPMP14384 443 aa7.34□□□□□ -1.24
CSMD1-213ENST00000523488 EMDP50402 254 aa7.34□□□□□ -1.24
CSMD1-213ENST00000523488 SGCGQ13326 291 aa7.34□□□□□ -1.24
CSMD1-213ENST00000523488 ABCA11PQ4W5N1 156 aa7.34□□□□□ -1.24
CSMD1-213ENST00000523488 CST9LP1Q5W188 147 aa7.34□□□□□ -1.24
CSMD1-213ENST00000523488 MARCH3Q86UD3 253 aa7.34□□□□□ -1.24
CSMD1-213ENST00000523488 OR2M7Q8NG81 312 aa7.34□□□□□ -1.24
CSMD1-213ENST00000523488 SPPL3Q8TCT6 385 aa7.34□□□□□ -1.24
CSMD1-213ENST00000523488 KIR3DX1Q9H7L2 352 aa7.34□□□□□ -1.24
CSMD1-213ENST00000523488 CENPMQ9NSP4 180 aa7.34□□□□□ -1.24
CSMD1-213ENST00000523488 FAM206AQ9NX38 181 aa7.34□□□□□ -1.24
CSMD1-213ENST00000523488 SLC5A6Q9Y289 635 aa7.34□□□□□ -1.24
CSMD1-213ENST00000523488 A0A0U1RQV5 110 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 K7ESM1 405 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 TNFSF13O75888 250 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 CSTAP01040 98 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 HBE1P02100 147 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 H2BFMP0C1H6 154 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 TFPI2P48307 235 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 C1orf140Q5VVS0 124 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 TOMM20LQ6UXN7 152 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 OR14L1PQ8NHC6 308 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 CYB5D2Q8WUJ1 264 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 MS4A10Q96PG2 267 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 MMP25Q9NPA2 562 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 GNG13Q9P2W3 67 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 NAGKQ9UJ70 344 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 SLC7A11Q9UPY5 501 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 INSL5Q9Y5Q6 135 aa7.33□□□□□ -1.24
CSMD1-213ENST00000523488 CDC14CA4D256 554 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms