RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 NPTNQ9Y639 398 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 ZNF469Q96JG9 3925 aaPredicted RBP12.84□□□□□ -0.35
LSM1-203ENST00000520755 CELSR1Q9NYQ6 3014 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 YLPM1P49750 1951 aaKnown RBP12.84□□□□□ -0.35
LSM1-203ENST00000520755 IGHV4-61A0A0C4DH41 118 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 LDLRAD4O15165 306 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 NOS1APO75052 506 aaPredicted RBP12.84□□□□□ -0.35
LSM1-203ENST00000520755 LHBP01229 141 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 SNRPBP14678 240 aaKnown RBP12.84□□□□□ -0.35
LSM1-203ENST00000520755 USF1P22415 310 aaPredicted RBP12.84□□□□□ -0.35
LSM1-203ENST00000520755 PSMD7P51665 324 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 BTG1P62324 171 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 UNC119Q13432 240 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 DGUOKQ16854 277 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 OR10K2Q6IF99 312 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 TMEM104Q8NE00 496 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 C19orf18Q8NEA5 215 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 OR51D1Q8NGF3 324 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 OR51F2Q8NH61 342 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 LGALS14Q8TCE9 139 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 SEH1LQ96EE3 360 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 CEP19Q96LK0 163 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 SLIRPQ9GZT3 109 aaKnown RBP12.84□□□□□ -0.35
LSM1-203ENST00000520755 OR5V1Q9UGF6 321 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 POLDIP2Q9Y2S7 368 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 DSCAML1Q8TD84 2053 aa12.84□□□□□ -0.35
LSM1-203ENST00000520755 MAST4O15021 2626 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 A0A096LNT2 108 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 BPNT1O95861 308 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 PAHP00439 452 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 ACAA1P09110 424 aaPredicted RBP12.83□□□□□ -0.36
LSM1-203ENST00000520755 VSIG8P0DPA2 414 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 CALCBP10092 127 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 CD99P14209 185 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 CD80P33681 288 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 GMFBP60983 142 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 ZMYND11Q15326 602 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 IDNKQ5T6J7 187 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 BIVMQ86UB2 503 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 MKXQ8IYA7 352 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 Q8NFD4 153 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 OR5H6Q8NGV6 325 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 FAM3DQ96BQ1 224 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 ING4Q9UNL4 249 aa12.83□□□□□ -0.36
LSM1-203ENST00000520755 PPIAL4EA0A075B759 164 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 TMEM272A0A1B0GTI8 110 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 TMEM14DPA8MWL7 114 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 PPIAL4DF5H284 164 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 IGHV2-70P01814 119 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 PPIAL4FP0DN26 164 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 SERPINA2P20848 420 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 RORCP51449 518 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 LOXL1Q08397 574 aaPredicted RBP12.82□□□□□ -0.36
LSM1-203ENST00000520755 CNPY1Q3B7I2 92 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 SLC22A6Q4U2R8 563 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 ELP2Q6IA86 826 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 CROCCP3Q8IVE0 287 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 DEFB108BQ8NET1 73 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 ZNF671Q8TAW3 534 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 FAM46BQ96A09 425 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 COX4I2Q96KJ9 171 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 GAL3ST1Q99999 423 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 TMUB1Q9BVT8 246 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 METTL9Q9H1A3 318 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 PPIAL4AQ9Y536 164 aa12.82□□□□□ -0.36
LSM1-203ENST00000520755 TRAPPC2LH3BP13 241 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 TFF1P04155 84 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 UBBP0CG47 229 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 ARSBP15848 533 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 MDH2P40926 338 aaKnown RBP12.81□□□□□ -0.36
LSM1-203ENST00000520755 EFNB2P52799 333 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 RSU1Q15404 277 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 C2orf76Q3KRA6 126 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 SFRP4Q6FHJ7 346 aaPredicted RBP12.81□□□□□ -0.36
LSM1-203ENST00000520755 ACP7Q6ZNF0 438 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 CLDND2Q8NHS1 167 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 SLC25A38Q96DW6 304 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 CYYR1Q96J86 154 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 C18orf12Q96KH6 178 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 NXF2Q9GZY0 626 aaKnown RBP12.81□□□□□ -0.36
LSM1-203ENST00000520755 BANF2Q9H503 90 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 ELL3Q9HB65 397 aaPredicted RBP12.81□□□□□ -0.36
LSM1-203ENST00000520755 HMG20AQ9NP66 347 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 ZNF581Q9P0T4 197 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 GHRLQ9UBU3 117 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 FBLN5Q9UBX5 448 aa12.81□□□□□ -0.36
LSM1-203ENST00000520755 FLNAP21333 2647 aaKnown RBP12.8□□□□□ -0.36
LSM1-203ENST00000520755 IGHV3OR15-7A0A075B7D8 119 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 HTR3BO95264 441 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 CYB5AP00167 134 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 MGMTP16455 207 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 PRKACAP17612 351 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 GLRA1P23415 457 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 IL2RGP31785 369 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 FGF12P61328 243 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 PIGYQ3MUY2 71 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 TEX36Q5VZQ5 186 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 METAP1DQ6UB28 335 aaPredicted RBP12.8□□□□□ -0.36
LSM1-203ENST00000520755 OR2W3Q7Z3T1 314 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 LRRC28Q86X40 367 aaPredicted RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms