RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 OR51Q1Q8NH59 317 aa2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 LRRC20Q8TCA0 184 aa2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 LGALS14Q8TCE9 139 aa2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 ITLN2Q8WWU7 325 aaPredicted RBP2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 C22orf15Q8WYQ4 148 aa2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 YIPF5Q969M3 257 aa2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 LRRC39Q96DD0 335 aa2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 QKIQ96PU8 341 aaKnown RBP eCLIP2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 CIB1Q99828 191 aa2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 SIKE1Q9BRV8 207 aa2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 COPS4Q9BT78 406 aa2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 THTPAQ9BU02 230 aa2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 HINT2Q9BX68 163 aa2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 ZNF302Q9NR11 478 aa2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 SDHAF3Q9NRP4 125 aa2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 NLE1Q9NVX2 485 aaPredicted RBP2.08□□□□□ -2.08
HMGB1P28-201ENST00000507778 ANKRD12Q6UB98 2062 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 IGKV2-24A0A0C4DH68 120 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 LOC389332A0A1B0GUA5 103 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 RAB19A4D1S5 217 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 ENSAO43768 121 aaKnown RBP2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 FSTL3O95633 263 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 CD8AP01732 235 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 IVLP07476 585 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 SLC6A1P30531 599 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 DNASE1L1P49184 302 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 XKP51811 444 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 STX4Q12846 297 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 ZNF404Q494X3 552 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 CLLU1OSQ5K130 101 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 RESP18Q5W5W9 173 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 FA2HQ7L5A8 372 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 ZNF555Q8NEP9 628 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 UBA3Q8TBC4 463 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 RBPMSQ93062 196 aaKnown RBP2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 MSANTD3Q96H12 275 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 TSGA10Q9BZW7 698 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 SRRQ9GZT4 340 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 ASB7Q9H672 318 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 XKR8Q9H6D3 395 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 VSIRQ9H7M9 311 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 FAM60AQ9NP50 221 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 TMEM38BQ9NVV0 291 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 TAC3Q9UHF0 121 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 STK38LQ9Y2H1 464 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 SIGLEC1Q9BZZ2 1709 aa2.07□□□□□ -2.08
HMGB1P28-201ENST00000507778 GMNCA6NCL1 334 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 BOLA2-SMG1P6H3BVE0 249 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 PSMD11O00231 422 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 UPK2O00526 184 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 RGS5O15539 181 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 SLC37A4O43826 429 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 TPM1P09493 284 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 IMPA1P29218 277 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 RANBP1P43487 201 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 ZNF235Q14590 738 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 GUSBP1Q15486 140 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 SSX1Q16384 188 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 ACTL10Q5JWF8 245 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 CLEC12AQ5QGZ9 265 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 CYP4Z1Q86W10 505 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 ST13P4Q8IZP2 240 aaPredicted RBP2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 GAPTQ8N292 157 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 TRIML2Q8N7C3 387 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 OR8A1Q8NGG7 326 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 OR8K3Q8NH51 312 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 TNFRSF14Q92956 283 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 PPP1R36Q96LQ0 422 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 HAUS4Q9H6D7 363 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 RMND1Q9NWS8 449 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 TAS2R1Q9NYW7 299 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 DNAJC27Q9NZQ0 273 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 ZNF229Q9UJW7 825 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 RBMX2Q9Y388 322 aaKnown RBP2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 ZNF780BQ9Y6R6 833 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 SYNRGQ9UMZ2 1314 aa2.06□□□□□ -2.08
HMGB1P28-201ENST00000507778 COX7A2P2O60397 106 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 IGHG2P01859 326 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 IGKV4-1P06312 121 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 GIMD1P0DJR0 217 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 TNNC1P63316 161 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 C2orf80Q0P641 193 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 BNIP2Q12982 314 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 BAMBIQ13145 260 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 TNXAQ16473 311 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 CEACAM16Q2WEN9 425 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 C18orf21Q32NC0 220 aaPredicted RBP2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 UBE2NLQ5JXB2 153 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 AADACL4Q5VUY2 407 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 CLEC18BQ6UXF7 455 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 FAM19A1Q7Z5A9 133 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 LINC00596Q86U02 117 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 RBM45Q8IUH3 476 aaKnown RBP2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 ZFP62Q8NB50 900 aaPredicted RBP2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 CLHC1Q8NHS4 586 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 ZBED3Q96IU2 234 aaPredicted RBP2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 ZNF396Q96N95 335 aaPredicted RBP2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 YPEL4Q96NS1 127 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 PRRG3Q9BZD7 231 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 NXF2Q9GZY0 626 aaKnown RBP2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms