RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 MS4A3Q96HJ5 214 aa7.22□□□□□ -1.25
USP54-215ENST00000497106 OR14J1Q9UGF5 321 aa7.22□□□□□ -1.25
USP54-215ENST00000497106 SLC23A1Q9UHI7 598 aa7.22□□□□□ -1.25
USP54-215ENST00000497106 TINAGQ9UJW2 476 aa7.22□□□□□ -1.25
USP54-215ENST00000497106 TRAPPC2LQ9UL33 140 aa7.22□□□□□ -1.25
USP54-215ENST00000497106 SNRPGP15A8MWD9 76 aa7.21□□□□□ -1.25
USP54-215ENST00000497106 ANGPTL7O43827 346 aa7.21□□□□□ -1.25
USP54-215ENST00000497106 RLN2P04090 185 aa7.21□□□□□ -1.25
USP54-215ENST00000497106 IL5P05113 134 aa7.21□□□□□ -1.25
USP54-215ENST00000497106 ZNF81P51508 661 aa7.21□□□□□ -1.25
USP54-215ENST00000497106 RBM11P57052 281 aaKnown RBP7.21□□□□□ -1.25
USP54-215ENST00000497106 UBE2V2Q15819 145 aa7.21□□□□□ -1.25
USP54-215ENST00000497106 LYZL4Q96KX0 146 aa7.21□□□□□ -1.25
USP54-215ENST00000497106 M0R233 179 aa7.21□□□□□ -1.25
USP54-215ENST00000497106 KRTAP27-1Q3LI81 207 aa7.21□□□□□ -1.25
USP54-215ENST00000497106 TMEM42Q69YG0 159 aa7.21□□□□□ -1.25
USP54-215ENST00000497106 ZNF486Q96H40 463 aaPredicted RBP7.21□□□□□ -1.25
USP54-215ENST00000497106 ARHGAP5-AS1Q96IT6 56 aa7.21□□□□□ -1.25
USP54-215ENST00000497106 LPAR5Q9H1C0 372 aa7.21□□□□□ -1.25
USP54-215ENST00000497106 SLC25A15Q9Y619 301 aa7.21□□□□□ -1.25
USP54-215ENST00000497106 PCNTO95613 3336 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 TMEM30CPA0ZSE6 113 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 SPINT2O43291 252 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 ZNF14P17017 642 aaPredicted RBP7.21□□□□□ -1.26
USP54-215ENST00000497106 SURF2Q15527 256 aaPredicted RBP7.21□□□□□ -1.26
USP54-215ENST00000497106 MBNL2Q5VZF2 373 aaKnown RBP7.21□□□□□ -1.26
USP54-215ENST00000497106 CD276Q5ZPR3 534 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 FAM185AQ8N0U4 392 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 KIRREL1Q96J84 757 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 NKX3-1Q99801 234 aaPredicted RBP7.21□□□□□ -1.26
USP54-215ENST00000497106 SOSTQ9BQB4 213 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 LMX1BO60663 402 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 IGKV3-15P01624 115 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 IL2RGP31785 369 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 FOXF2Q12947 444 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 KLF9Q13886 244 aaPredicted RBP7.21□□□□□ -1.26
USP54-215ENST00000497106 TESK1Q15569 626 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 Q6ZSR3 168 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 OR5D13Q8NGL4 314 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 NUDCD2Q8WVJ2 157 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 AQP3Q92482 292 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 CLCC1Q96S66 551 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 SPIN2AQ99865 258 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 SPIN2BQ9BPZ2 258 aa7.21□□□□□ -1.26
USP54-215ENST00000497106 MYOZ1Q9NP98 299 aaPredicted RBP7.21□□□□□ -1.26
USP54-215ENST00000497106 CNOT1A5YKK6 2376 aaKnown RBP7.21□□□□□ -1.26
USP54-215ENST00000497106 PCP4L1A6NKN8 68 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 C1QTNF9BB2RNN3 333 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 TNFSF13O75888 250 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 IGLV3-1P01715 115 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 PDGFAP04085 211 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 C1QTNF9P0C862 333 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 KITLGP21583 273 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 CD40P25942 277 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 GABRA2P47869 451 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 ASCC1Q8N9N2 400 aaKnown RBP7.2□□□□□ -1.26
USP54-215ENST00000497106 OR4C16Q8NGL9 310 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 NPTNQ9Y639 398 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 NDUFB6O95139 128 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 ZNF728P0DKX0 622 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 ZNF260Q3ZCT1 412 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 ZNF529Q6P280 563 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 C12orf45Q8N5I9 185 aaPredicted RBP7.2□□□□□ -1.26
USP54-215ENST00000497106 FGFBP3Q8TAT2 258 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 SLC25A28Q96A46 364 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 Q96M66 194 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 METTL8Q9H825 291 aaKnown RBP7.2□□□□□ -1.26
USP54-215ENST00000497106 MGAT4CQ9UBM8 478 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 RIF1Q5UIP0 2472 aaKnown RBP7.2□□□□□ -1.26
USP54-215ENST00000497106 PQLC2LA1A4F0 135 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 C5orf51A6NDU8 294 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 CD3DP04234 171 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 SEC61A1P61619 476 aaKnown RBP7.2□□□□□ -1.26
USP54-215ENST00000497106 SORDQ00796 357 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 TSC22D1Q15714 1073 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 FAM166AQ6J272 317 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 FAM90A1Q86YD7 464 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 OR51S1Q8NGJ8 323 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 SEH1LQ96EE3 360 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 RBM14Q96PK6 669 aaKnown RBP7.2□□□□□ -1.26
USP54-215ENST00000497106 C1orf123Q9NWV4 160 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 RNF7Q9UBF6 113 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 ALG5Q9Y673 324 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 ABCD4O14678 606 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 MELTFP08582 738 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 BCL3P20749 454 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 SLC6A1P30531 599 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 RRAS2P62070 204 aaPredicted RBP7.2□□□□□ -1.26
USP54-215ENST00000497106 S100A12P80511 92 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 PLA1AQ53H76 456 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 FAHD2BQ6P2I3 314 aaPredicted RBP7.2□□□□□ -1.26
USP54-215ENST00000497106 GSG1LQ6UXU4 331 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 LRRC29Q8WV35 223 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 FAHD2AQ96GK7 314 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 ZMAT3Q9HA38 289 aaKnown RBP7.2□□□□□ -1.26
USP54-215ENST00000497106 IL19Q9UHD0 177 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 TBC1D24Q9ULP9 559 aa7.2□□□□□ -1.26
USP54-215ENST00000497106 IGHV1-18A0A0C4DH31 117 aa7.19□□□□□ -1.26
USP54-215ENST00000497106 A0A0G2JNJ9 132 aa7.19□□□□□ -1.26
USP54-215ENST00000497106 SPRY3O43610 288 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms