RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 SNX22Q96L94 193 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 PKIBQ9C010 78 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 SEBOXQ9HB31 216 aaPredicted RBP11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 FAM206AQ9NX38 181 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 PIGLQ9Y2B2 252 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 ZNF256Q9Y2P7 627 aaPredicted RBP11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 LYVE1Q9Y5Y7 322 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 SMAD5-AS1Q9Y6J3 95 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 V9GYQ6 96 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 OOSP1A8MZH6 123 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 DHRS3O75911 302 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 CEACAM3P40198 252 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 SLC35B1P78383 322 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 SF3A3Q12874 501 aaKnown RBP eCLIP11.23□□□□□ -0.612e-7■□□□□ 10.3
PRPF40A-211ENST00000493468 IL24Q13007 206 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 OR52W1Q6IF63 320 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 CGB2Q6NT52 195 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 EGFL6Q8IUX8 553 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 ABHD12Q8N2K0 398 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 OR8U1Q8NH10 309 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 THEM6Q8WUY1 208 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 CITED4Q96RK1 184 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 MED20Q9H944 212 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 SPAG4Q9NPE6 437 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 ARMC1Q9NVT9 282 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 SCOCQ9UIL1 159 aa11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.23□□□□□ -0.61
PRPF40A-211ENST00000493468 FAM183AA6NL82 134 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 PSMD9O00233 223 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 DLGAP1O14490 977 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 GASTP01350 101 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 CD34P28906 385 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 EDDM3AQ14507 147 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 KIAA2026Q5HYC2 2103 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 CLVS2Q5SYC1 327 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 CCDC144NLQ6NUI1 221 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 DEGS2Q6QHC5 323 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 COMMD2Q86X83 199 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 SBSPONQ8IVN8 264 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 OR51E1Q8TCB6 317 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 GPR84Q9NQS5 396 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 MAGEL2Q9UJ55 1249 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 KLHDC2Q9Y2U9 406 aa11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 UBE2J1Q9Y385 318 aaPredicted RBP11.22□□□□□ -0.61
PRPF40A-211ENST00000493468 TMEM269A0A1B0GVZ9 245 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 TMEM82A0PJX8 343 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 SEC14L6B5MCN3 397 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 FGF16O43320 207 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 SELENOFO60613 162 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 MMP23AO75900 390 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 SOX14O95416 240 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 SNRNP70P08621 437 aaKnown RBP11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 FAM106CPP0CH98 169 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 H2AFXP16104 143 aaPredicted RBP11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 PEX2P28328 305 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 MNDAP41218 407 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 RAB25P57735 213 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 PSME3P61289 254 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 TPTE2P1Q5T6R2 138 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 KRT77Q7Z794 578 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 THNSL2Q86YJ6 484 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 BATF2Q8N1L9 274 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 NOL4LQ96MY1 436 aaPredicted RBP11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 DUX3Q96PT4 197 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 TEAD3Q99594 435 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 DGCR6LQ9BY27 220 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 PBOV1Q9GZY1 135 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 FGFR1OP2Q9NVK5 253 aa11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 NUFIP1Q9UHK0 495 aaKnown RBP11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 SIRT4Q9Y6E7 314 aaPredicted RBP11.21□□□□□ -0.61
PRPF40A-211ENST00000493468 FAM90A18PA6NE21 464 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 ARRDC5A6NEK1 342 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 FAM90A16PA6NEW6 464 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 FAM90A20PA6NIJ5 464 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 FAM90A9PA6NNJ1 464 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 SERPINE3A8MV23 424 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 FAM90A12PA8MX19 464 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 FAM90A5PA8MXJ8 464 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 LY6LH3BQJ8 138 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 TNFRSF11BO00300 401 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 PRODHO43272 600 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 CCNB2O95067 398 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 FAM90A15PP0C7V4 464 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 FAM90A13PP0C7W8 464 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 FAM90A14PP0C7W9 464 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 FAM90A24PP0C7X0 464 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 ALOX5APP20292 161 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 ERP29P30040 261 aaKnown RBP11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 KIR2DS1Q14954 304 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 GRK1Q15835 563 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 HLA-DRB5Q30154 266 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 HEPN1Q6WQI6 88 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 ASRGL1Q7L266 308 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 MEPCEQ7L2J0 689 aaKnown RBP11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 RNF148Q8N7C7 305 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 TPRX1Q8N7U7 411 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 C5orf56Q8N8D9 126 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 AQP11Q8NBQ7 271 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 CEP19Q96LK0 163 aa11.2□□□□□ -0.62
PRPF40A-211ENST00000493468 GAL3ST2Q9H3Q3 398 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 132.5 ms