RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 IGLV3-9A0A075B6K5 115 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 M0R129 80 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 ARPC5O15511 151 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 RNF13O43567 381 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 NDUFS6O75380 124 aaKnown RBP11.11□□□□□ -0.63
HDAC3-213ENST00000492506 LIMS3P0CW19 117 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 LIMS4P0CW20 117 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 HLA-DOBP13765 273 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 GATA3P23771 443 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 FPR2P25090 351 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 GRPRP30550 384 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 KCNJ3P48549 501 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 ANXA11P50995 505 aaKnown RBP11.11□□□□□ -0.63
HDAC3-213ENST00000492506 RIDAP52758 137 aaKnown RBP11.11□□□□□ -0.63
HDAC3-213ENST00000492506 EFNB1P98172 346 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 UBE2NLQ5JXB2 153 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 ENTPD8Q5MY95 495 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 CARD17Q5XLA6 110 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 TMPRSS11FQ6ZWK6 438 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 DOK3Q7L591 496 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 SLC16A13Q7RTY0 426 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 REC114Q7Z4M0 266 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-213ENST00000492506 ANGPTL5Q86XS5 388 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 PAQR4Q8N4S7 273 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-213ENST00000492506 KCNRGQ8N5I3 272 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 DNAAF1Q8NEP3 725 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 TMEM185AQ8NFB2 350 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 FGFBP3Q8TAT2 258 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 THEM6Q8WUY1 208 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 CMSS1Q9BQ75 279 aaKnown RBP11.11□□□□□ -0.63
HDAC3-213ENST00000492506 EMC6Q9BV81 110 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 RSPO3Q9BXY4 272 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-213ENST00000492506 NKIRAS2Q9NYR9 191 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 TVP23BQ9NYZ1 205 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 TAAR3PQ9P1P4 343 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 ZNF69Q9UC07 566 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 WIPI2Q9Y4P8 454 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 POMT1Q9Y6A1 747 aa11.11□□□□□ -0.63
HDAC3-213ENST00000492506 IGKV1D-42A0A075B6H8 117 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 FXYD6-FXYD2A0A087WZ82 144 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 IGHV1-69-2A0A0G2JMI3 117 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 DNAJC9-AS1A6NH13 148 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 BCL2L11O43521 198 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 OR2T1O43869 369 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 OR10H3O60404 316 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 NDUFB6O95139 128 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 MT-ND4LP03901 98 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 PATE4P0C8F1 98 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 SLC25A4P12235 298 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 ZFP36P26651 326 aaKnown RBP11.1□□□□□ -0.63
HDAC3-213ENST00000492506 LAP3P28838 519 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 GPX4P36969 197 aaPredicted RBP11.1□□□□□ -0.63
HDAC3-213ENST00000492506 GDNFP39905 211 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 CAV3P56539 151 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 EIF5AP63241 154 aaKnown RBP11.1□□□□□ -0.63
HDAC3-213ENST00000492506 BLOC1S1P78537 153 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 HNF4GQ14541 408 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 RPS26P11Q5JNZ5 115 aaPredicted RBP11.1□□□□□ -0.63
HDAC3-213ENST00000492506 PGBD2Q6P3X8 592 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 SMARCD3Q6STE5 483 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 H1FNTQ75WM6 255 aaPredicted RBP11.1□□□□□ -0.63
HDAC3-213ENST00000492506 GID4Q8IVV7 300 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 ADPRHL1Q8NDY3 354 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 OR5J2Q8NH18 312 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 RXFP4Q8TDU9 374 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 SLC38A5Q8WUX1 472 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 CCDC107Q8WV48 283 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 GATAD2BQ8WXI9 593 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 MALSU1Q96EH3 234 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 SLC41A3Q96GZ6 507 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 DUX5Q96PT3 197 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 ABHD1Q96SE0 405 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 C2orf88Q9BSF0 95 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 CHIAQ9BZP6 476 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 FXYD6Q9H0Q3 95 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 HRASLSQ9HDD0 168 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 TRIM36Q9NQ86 728 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 HINT3Q9NQE9 182 aaKnown RBP11.1□□□□□ -0.63
HDAC3-213ENST00000492506 GFOD1Q9NXC2 390 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 TAS2R8Q9NYW2 309 aa11.1□□□□□ -0.63
HDAC3-213ENST00000492506 A0A1W2PRQ8 180 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 C9orf170A2RU37 121 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 METTL21EPA6NDL7 271 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 OR6C68A6NDL8 312 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 POM121CA8CG34 1229 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 PSMD9O00233 223 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 SIX6O95475 246 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 SERPINA5P05154 406 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 RCC1P18754 421 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-213ENST00000492506 RBP2P50120 134 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 CCR6P51684 374 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 SNRPEP62304 92 aaKnown RBP11.09□□□□□ -0.63
HDAC3-213ENST00000492506 HABP2Q14520 560 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-213ENST00000492506 GINS1Q14691 196 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 SGCAQ16586 387 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 PCGF3Q3KNV8 242 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 KLF17Q5JT82 389 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-213ENST00000492506 REEP3Q6NUK4 255 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 NAA40Q86UY6 237 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms