RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 NANPQ8TBE9 248 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 EMG1Q92979 244 aaKnown RBP13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 CPNE2Q96FN4 548 aaPredicted RBP13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 SDSLQ96GA7 329 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 SLC25A10Q9UBX3 287 aaPredicted RBP13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 OR14J1Q9UGF5 321 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 C2CD3Q4AC94 2353 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 F8VVB4 439 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 F8VWA3 439 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 LIPFP07098 398 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 BCL3P20749 454 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 EEF1B2P24534 225 aaKnown RBP13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 PRDX2P32119 198 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 CEBPDP49716 269 aaPredicted RBP13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 CAV3P56539 151 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 KISS1Q15726 138 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ARMCX4Q5H9R4 360 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 CRIP3Q6Q6R5 217 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ZNF561Q8N587 486 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 CD177Q8N6Q3 437 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 PNLDC1Q8NA58 520 aaKnown RBP13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ZNRF1Q8ND25 227 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 TMEM185AQ8NFB2 350 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 OR14A2Q96R54 314 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 METRNQ9UJH8 293 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 RPUSD1Q9UJJ7 312 aaKnown RBP13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 MAB21L2Q9Y586 359 aa13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 SETD2Q9BYW2 2564 aaPredicted RBP13.48□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 TRBV5-7A0A0A0MS05 114 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ZNF879B4DU55 563 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ANGPTL7O43827 346 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 FSHBP01225 129 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 PPIAL4GP0DN37 164 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 NDUFB7P17568 137 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 IGFBP3P17936 291 aaPredicted RBP13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 FSTP19883 344 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 NPBWR2P48146 333 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 CAPZA1P52907 286 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ZP1P60852 638 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 SCGB2A2Q13296 93 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 FIP1L1Q6UN15 594 aaKnown RBP13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 SAXO1Q8IYX7 474 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ZSCAN4Q8NAM6 433 aaPredicted RBP13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 OR52N4Q8NGI2 321 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 H1FXQ92522 213 aaKnown RBP13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 THRSPQ92748 146 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ORAI1Q96D31 301 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 DCTN5Q9BTE1 182 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 TMEM138Q9NPI0 162 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 RBFOX1Q9NWB1 397 aaKnown RBP13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 CKLFQ9UBR5 152 aa13.47□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 NIPBLQ6KC79 2804 aaeCLIP13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 IGKV1-12A0A0C4DH73 117 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 KDM4BO94953 1096 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 IGKV1D-12P01611 117 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ALDOBP05062 364 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 TMEM225BP0DP42 221 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 PRKACAP17612 351 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 MAPK3P27361 379 aaPredicted RBP13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 BDKRB2P30411 391 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 GABARAPL2P60520 117 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 FGF12P61328 243 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 TBCEQ15813 527 aaPredicted RBP13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 KRTAP21-3Q3LHN1 58 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 DDI2Q5TDH0 399 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 SATL1Q86VE3 508 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 FAM58AQ8N1B3 248 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 LY6G5BQ8NDX9 201 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 UFD1Q92890 307 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 UPRTQ96BW1 309 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 DERL3Q96Q80 235 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 GPER1Q99527 375 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 RHOFQ9HBH0 211 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ISYNA1Q9NPH2 558 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 IL36RNQ9UBH0 155 aa13.46□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 GABRPO00591 440 aa13.45□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 GPX5O75715 221 aa13.45□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 HSMCR30P0CW71 290 aa13.45□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 EPHA1P21709 976 aa13.45□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 MAP2K4P45985 399 aa13.45□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 COL10A1Q03692 680 aa13.45□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 GPR50Q13585 617 aa13.45□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 MS4A15Q8N5U1 240 aa13.45□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 C8orf46Q8TAG6 207 aa13.45□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 TNFAIP8L1Q8WVP5 186 aa13.45□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 TMED9Q9BVK6 235 aa13.45□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 CNTD2Q9H8S5 307 aa13.45□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 ELL3Q9HB65 397 aaPredicted RBP13.45□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 HMG20AQ9NP66 347 aa13.45□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 FOXJ3Q9UPW0 622 aa13.45□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 DOCK11Q5JSL3 2073 aa13.44□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 SVEP1Q4LDE5 3571 aa13.44□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 TRAV8-7A0A075B6U6 113 aa13.44□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 A0A1W2PPK0 400 aa13.44□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 MRPS14O60783 128 aaKnown RBP13.44□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 TOX4O94842 621 aa13.44□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 HAND1O96004 215 aa13.44□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 SFTPBP07988 381 aa13.44□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 CHRM2P08172 466 aa13.44□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 CALCBP10092 127 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms