RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 C16orf47Q6ZP98 133 aaPredicted RBP14.58□□□□□ -0.07
COL7A1-210ENST00000487017 ACY3Q96HD9 319 aa14.58□□□□□ -0.07
COL7A1-210ENST00000487017 MAP1LC3BQ9GZQ8 125 aa14.58□□□□□ -0.07
COL7A1-210ENST00000487017 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.58□□□□□ -0.07
COL7A1-210ENST00000487017 ZNF107Q9UII5 783 aaPredicted RBP14.58□□□□□ -0.07
COL7A1-210ENST00000487017 ARFGEF1Q9Y6D6 1849 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 CD200P41217 278 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 GALR1P47211 349 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 IGFBP7Q16270 282 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 CLEC18BQ6UXF7 455 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 SFTPA1Q8IWL2 248 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 OR10D4PQ8NGN7 298 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 UBALD1Q8TB05 177 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 CRHP06850 196 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 EIF4EBP2Q13542 120 aaPredicted RBP14.58□□□□□ -0.08
COL7A1-210ENST00000487017 VAMP3Q15836 100 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 TMEM241Q24JQ0 296 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 KLHDC1Q8N7A1 406 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 LSM2Q9Y333 95 aaKnown RBP14.58□□□□□ -0.08
COL7A1-210ENST00000487017 COL24A1Q17RW2 1714 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 LRFN3Q9BTN0 628 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 LINC00862A6NCI5 91 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 OR4C45A6NMZ5 311 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 CA6P23280 308 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 RPL13AP40429 203 aaKnown RBP14.58□□□□□ -0.08
COL7A1-210ENST00000487017 DGAT2L6Q6ZPD8 337 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 STPG2Q8N412 459 aa14.58□□□□□ -0.08
COL7A1-210ENST00000487017 CACNA1CQ13936 2221 aa14.57□□□□□ -0.08
COL7A1-210ENST00000487017 KIAA1217Q5T5P2 1943 aa14.57□□□□□ -0.08
COL7A1-210ENST00000487017 TRGV5A0A0B4J1U4 118 aa14.57□□□□□ -0.08
COL7A1-210ENST00000487017 SH2D7A6NKC9 451 aaPredicted RBP14.57□□□□□ -0.08
COL7A1-210ENST00000487017 LY86O95711 162 aa14.57□□□□□ -0.08
COL7A1-210ENST00000487017 GALNSP34059 522 aa14.57□□□□□ -0.08
COL7A1-210ENST00000487017 CACNG5Q9UF02 275 aa14.57□□□□□ -0.08
COL7A1-210ENST00000487017 ST8SIA5O15466 376 aa14.57□□□□□ -0.08
COL7A1-210ENST00000487017 FAM109BQ6ICB4 259 aaPredicted RBP14.57□□□□□ -0.08
COL7A1-210ENST00000487017 CXorf67Q86X51 503 aaPredicted RBP14.57□□□□□ -0.08
COL7A1-210ENST00000487017 GPA33Q99795 319 aa14.57□□□□□ -0.08
COL7A1-210ENST00000487017 LSM11P83369 360 aaKnown RBP eCLIP14.57□□□□□ -0.081e-6■■■■■ 28.2
COL7A1-210ENST00000487017 C1QL3Q5VWW1 255 aa14.57□□□□□ -0.08
COL7A1-210ENST00000487017 SLC25A42Q86VD7 318 aa14.57□□□□□ -0.08
COL7A1-210ENST00000487017 M1APQ8TC57 530 aa14.57□□□□□ -0.08
COL7A1-210ENST00000487017 CYR61O00622 381 aa14.57□□□□□ -0.08
COL7A1-210ENST00000487017 OR10D3Q8NH80 312 aa14.57□□□□□ -0.08
COL7A1-210ENST00000487017 MOB3AQ96BX8 217 aa14.57□□□□□ -0.08
COL7A1-210ENST00000487017 LPAR3Q9UBY5 353 aa14.57□□□□□ -0.08
COL7A1-210ENST00000487017 TMEM218A2RU14 115 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 MED19A0JLT2 244 aaPredicted RBP14.56□□□□□ -0.08
COL7A1-210ENST00000487017 TNFSF14O43557 240 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 LANCL1O43813 399 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 CLPPQ16740 277 aaPredicted RBP14.56□□□□□ -0.08
COL7A1-210ENST00000487017 OR2A2Q6IF42 318 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 OR11G2Q8NGC1 345 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 COL4A1P02462 1669 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 C17orf78Q8N4C9 275 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 NUBPLQ8TB37 319 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 TMEM37Q8WXS4 190 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 ZDHHC16Q969W1 377 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 ESRP2Q9H6T0 727 aaKnown RBP14.56□□□□□ -0.08
COL7A1-210ENST00000487017 P4HTMQ9NXG6 502 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 TCRBV16S1A1N1A0A5B0 115 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 ZNF737O75373 536 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 P2RY1P47900 373 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 ZAR1Q86SH2 424 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 ARRDC1-AS1Q9H2J1 176 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 ANXA10Q9UJ72 324 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 MEX3AA1L020 520 aaKnown RBP14.56□□□□□ -0.08
COL7A1-210ENST00000487017 NCBP2LA6PVI3 153 aaKnown RBP14.56□□□□□ -0.08
COL7A1-210ENST00000487017 SOCS1O15524 211 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 SPRY3O43610 288 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 IGSF11Q5DX21 431 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 PLA2G3Q9NZ20 509 aa14.56□□□□□ -0.08
COL7A1-210ENST00000487017 IGHV1OR15-9A0A0B4J2B8 117 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 ZFP36L2P47974 494 aaKnown RBP14.55□□□□□ -0.08
COL7A1-210ENST00000487017 IQCJQ1A5X6 159 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 MOB3BQ86TA1 216 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 OR10AC1Q8NH08 325 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 TRAF4Q9BUZ4 470 aaPredicted RBP14.55□□□□□ -0.08
COL7A1-210ENST00000487017 LOC102723971A0A1B0GUV8 181 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 LIPT2A6NK58 231 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 SRD5A2P31213 254 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 SKP2Q13309 424 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 OR5M9Q8NGP3 310 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 FAM210BQ96KR6 192 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 POU2F2P09086 479 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 FBP1P09467 338 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 ZNF250P15622 560 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 NXPH1P58417 271 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.55□□□□□ -0.08
COL7A1-210ENST00000487017 OR2Z1Q8NG97 314 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 PRR13Q9NZ81 148 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 ST6GALNAC2Q9UJ37 374 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 TRAV8-7A0A075B6U6 113 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 K7EQS6 105 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 IL24Q13007 206 aa14.55□□□□□ -0.08
COL7A1-210ENST00000487017 PCDHGA9Q9Y5G4 932 aaKnown RBP14.55□□□□□ -0.08
COL7A1-210ENST00000487017 TMEM265A0A087WTH1 108 aa14.54□□□□□ -0.08
COL7A1-210ENST00000487017 ACER2Q5QJU3 275 aa14.54□□□□□ -0.08
COL7A1-210ENST00000487017 TRAT1Q6PIZ9 186 aa14.54□□□□□ -0.08
COL7A1-210ENST00000487017 OR2T6Q8NHC8 308 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms