RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 PCDHGB5Q9Y5G0 923 aa12.22□□□□□ -0.45
USP4-212ENST00000486549 FBN1P35555 2871 aaKnown RBP12.21□□□□□ -0.45
USP4-212ENST00000486549 A0A0A6YYJ9 748 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 RGS10O43665 173 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 TCF21O43680 179 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 ANGPTL7O43827 346 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 ECDO95905 644 aaPredicted RBP12.21□□□□□ -0.45
USP4-212ENST00000486549 MT-ND2P03891 347 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 CALCBP10092 127 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 CELP19835 753 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 BCL3P20749 454 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 PRDX2P32119 198 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 SNU13P55769 128 aaKnown RBP12.21□□□□□ -0.45
USP4-212ENST00000486549 SLC35A2P78381 396 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 SRSF2Q01130 221 aaKnown RBP12.21□□□□□ -0.45
USP4-212ENST00000486549 OR51A2Q8NGJ7 313 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 C22orf15Q8WYQ4 148 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 PGLYRP3Q96LB9 341 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 PCGF1Q9BSM1 259 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 CDCA4Q9BXL8 241 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 CCDC90BQ9GZT6 254 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 RBFOX1Q9NWB1 397 aaKnown RBP12.21□□□□□ -0.45
USP4-212ENST00000486549 ONECUT1Q9UBC0 465 aa12.21□□□□□ -0.45
USP4-212ENST00000486549 RPUSD1Q9UJJ7 312 aaKnown RBP12.21□□□□□ -0.45
USP4-212ENST00000486549 TRAV40A0A0B4J280 105 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 ZNF879B4DU55 563 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 MAGEB3O15480 346 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 FSHBP01225 129 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 CRHBPP24387 322 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 NPBWR2P48146 333 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 ARF6P62330 175 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 PDZK1IP1Q13113 114 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 MED22Q15528 200 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 KISS1Q15726 138 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 YIF1BQ5BJH7 314 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 KLF17Q5JT82 389 aaPredicted RBP12.2□□□□□ -0.46
USP4-212ENST00000486549 ASPHD2Q6ICH7 369 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 SATL1Q86VE3 508 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 PHC2Q8IXK0 858 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 SDSLQ96GA7 329 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 OR14A2Q96R54 314 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 OR5M11Q96RB7 305 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 GPER1Q99527 375 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 ZNF184Q99676 751 aaPredicted RBP12.2□□□□□ -0.46
USP4-212ENST00000486549 NKX3-1Q99801 234 aaPredicted RBP12.2□□□□□ -0.46
USP4-212ENST00000486549 DCTN5Q9BTE1 182 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 IL36RNQ9UBH0 155 aa12.2□□□□□ -0.46
USP4-212ENST00000486549 IGKV1-12A0A0C4DH73 117 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 TRBV5-5A0A0J9YX44 114 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 A0A1W2PPK0 400 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 A0A1W2PQ09 198 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 GPR37O15354 613 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 TOX4O94842 621 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 KNG1P01042 644 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 IGKV1D-12P01611 117 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 LIPFP07098 398 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 SFTPBP07988 381 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 PPIAL4GP0DN37 164 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 IGHV4-38-2P0DP08 117 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 TMEM225BP0DP42 221 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 PRKACAP17612 351 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 EEF1B2P24534 225 aaKnown RBP12.19□□□□□ -0.46
USP4-212ENST00000486549 RPS11P62280 158 aaKnown RBP eCLIP12.19□□□□□ -0.46
USP4-212ENST00000486549 PPP3R1P63098 170 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 COL10A1Q03692 680 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 Q499Y3 187 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 METTL11BQ5VVY1 283 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 RNLSQ5VYX0 342 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 CRIP3Q6Q6R5 217 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 FIP1L1Q6UN15 594 aaKnown RBP12.19□□□□□ -0.46
USP4-212ENST00000486549 Q8IYB0 196 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 FAM58AQ8N1B3 248 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 BPIFB2Q8N4F0 458 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 ZNF561Q8N587 486 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 ASCC1Q8N9N2 400 aaKnown RBP12.19□□□□□ -0.46
USP4-212ENST00000486549 OR52N4Q8NGI2 321 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 UPRTQ96BW1 309 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 SLC6A7Q99884 636 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 FAM192AQ9GZU8 254 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 DUSP21Q9H596 190 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 CNTD2Q9H8S5 307 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 NUP50Q9UKX7 468 aa12.19□□□□□ -0.46
USP4-212ENST00000486549 LSM2Q9Y333 95 aaKnown RBP12.19□□□□□ -0.46
USP4-212ENST00000486549 ALX3O95076 343 aa12.18□□□□□ -0.46
USP4-212ENST00000486549 DUSP1P28562 367 aa12.18□□□□□ -0.46
USP4-212ENST00000486549 CAV3P56539 151 aa12.18□□□□□ -0.46
USP4-212ENST00000486549 BDH1Q02338 343 aa12.18□□□□□ -0.46
USP4-212ENST00000486549 IRF3Q14653 427 aa12.18□□□□□ -0.46
USP4-212ENST00000486549 SPHARQ15513 63 aa12.18□□□□□ -0.46
USP4-212ENST00000486549 C11orf91Q3C1V1 193 aa12.18□□□□□ -0.46
USP4-212ENST00000486549 RBM48Q5RL73 367 aaKnown RBP12.18□□□□□ -0.46
USP4-212ENST00000486549 DDI2Q5TDH0 399 aa12.18□□□□□ -0.46
USP4-212ENST00000486549 ZNF529Q6P280 563 aa12.18□□□□□ -0.46
USP4-212ENST00000486549 FAM185AQ8N0U4 392 aa12.18□□□□□ -0.46
USP4-212ENST00000486549 TNFAIP8L1Q8WVP5 186 aa12.18□□□□□ -0.46
USP4-212ENST00000486549 CPNE2Q96FN4 548 aaPredicted RBP12.18□□□□□ -0.46
USP4-212ENST00000486549 WDFY2Q96P53 400 aa12.18□□□□□ -0.46
USP4-212ENST00000486549 Q9H521 79 aa12.18□□□□□ -0.46
USP4-212ENST00000486549 CKLFQ9UBR5 152 aa12.18□□□□□ -0.46
USP4-212ENST00000486549 ZNF69Q9UC07 566 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms