RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 HIST1H2BNQ99877 126 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 HIST1H2BMQ99879 126 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 PIGQQ9BRB3 760 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 ZPBPQ9BS86 351 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 KIAA1456Q9P272 454 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 ARID1AO14497 2285 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 REV3LO60673 3130 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 ZNF727A8MUV8 499 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 TSTD3H0UI37 97 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 IGLV3-19P01714 112 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 SFTPDP35247 375 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 SUMO3P55854 103 aaPredicted RBP11.62□□□□□ -0.55
USP40-214ENST00000483519 HIST2H3PS2Q5TEC6 136 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 OGFOD3Q6PK18 319 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 LIAT1Q6ZQX7 453 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 REC114Q7Z4M0 266 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 STX12Q86Y82 276 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 UEVLDQ8IX04 471 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 LGI3Q8N145 548 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 RNASE11Q8TAA1 199 aaKnown RBP11.62□□□□□ -0.55
USP40-214ENST00000483519 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.62□□□□□ -0.55
USP40-214ENST00000483519 TCFL5Q9UL49 500 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 ZDHHC8Q9ULC8 765 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 RCL1Q9Y2P8 373 aaKnown RBP11.62□□□□□ -0.55
USP40-214ENST00000483519 H3BML4 177 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 HSD17B6O14756 317 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 RER1O15258 196 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 SEMA4FO95754 770 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 CXCL1P09341 107 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 GABRR1P24046 479 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 CDAP32320 146 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 BLKP51451 505 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 PKIAP61925 76 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 DLK1P80370 383 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 C17orf67Q0P5P2 114 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 FZD2Q14332 565 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 RSU1Q15404 277 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 SPNS3Q6ZMD2 512 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 OR2G3Q8NGZ4 309 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 PGAM5Q96HS1 289 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 C18orf12Q96KH6 178 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 RHOVQ96L33 236 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 NIPSNAP3BQ9BS92 247 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 PNRC2Q9NPJ4 139 aaKnown RBP11.61□□□□□ -0.55
USP40-214ENST00000483519 IGHV5-51A0A0C4DH38 117 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 FAM230AA0A1W2PPH8 454 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 ZNF850A8MQ14 1090 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 PGA4P0DJD7 388 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 PGA3P0DJD8 388 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 FCGR2AP12318 317 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 CEBPGP53567 150 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 EWSR1Q01844 656 aaKnown RBP eCLIP11.61□□□□□ -0.55
USP40-214ENST00000483519 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.61□□□□□ -0.55
USP40-214ENST00000483519 ZNF429Q86V71 674 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 HIST3H2BBQ8N257 126 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 OR52M1Q8NGK5 317 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 OR14L1PQ8NHC6 308 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 PP6455Q8WZ26 134 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 TVP23CQ96ET8 276 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 MVB12AQ96EY5 273 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 B3GAT1Q9P2W7 334 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 AK3Q9UIJ7 227 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 VDAC3Q9Y277 283 aa11.61□□□□□ -0.55
USP40-214ENST00000483519 F5P12259 2224 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 OR5H15A6NDH6 313 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 OR5H1A6NKK0 313 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 METTL12A8MUP2 240 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 ADAM10O14672 748 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 CYB5BO43169 146 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 SRP19P09132 144 aaKnown RBP11.6□□□□□ -0.55
USP40-214ENST00000483519 THEGLP0DJG4 465 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 RND3P61587 244 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 FOXF1Q12946 379 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 DMRTC1Q5HYR2 192 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 ZNF343Q6P1L6 599 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 HAS2Q92819 552 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 BOD1Q96IK1 185 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 SYT3Q9BQG1 590 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 HDHD3Q9BSH5 251 aaPredicted RBP11.6□□□□□ -0.55
USP40-214ENST00000483519 URGCP-MRPS24S4R325 110 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 M0R296 226 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 PTBP3O95758 552 aaKnown RBP11.6□□□□□ -0.55
USP40-214ENST00000483519 HSPB1P04792 205 aaKnown RBP11.6□□□□□ -0.55
USP40-214ENST00000483519 DDTP30046 118 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 GFERP55789 205 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 ERVFRD-1P60508 538 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 CRIP3Q6Q6R5 217 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 WNT5BQ9H1J7 359 aa11.6□□□□□ -0.55
USP40-214ENST00000483519 DNAH14Q0VDD8 3507 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 A0A1B0GV90 55 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 ZNF726A6NNF4 738 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 H0YL77 283 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 HSPA12AO43301 675 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 ANOS1P23352 680 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 DTYMKP23919 212 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 FASLGP48023 281 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 GLIPR1P48060 266 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 KHDC3LQ587J8 217 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 SPSB3Q6PJ21 355 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 SLC35E3Q7Z769 313 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms