RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 PYHIN1Q6K0P9 492 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 FAM131AQ6UXB0 335 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 MOGAT3Q86VF5 341 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 TGIF2LYQ8IUE0 185 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 ZNF295-AS1Q8N0V1 137 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 BATF2Q8N1L9 274 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 GCSAMQ8N6F7 178 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 OR10Z1Q8NGY1 313 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 ERGIC1Q969X5 290 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 S100A16Q96FQ6 103 aaKnown RBP6.95□□□□□ -1.3
USP4-210ENST00000483212 POM121Q96HA1 1249 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 S100A13Q99584 98 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 GAL3ST1Q99999 423 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 SELENOIQ9C0D9 397 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 ATG5Q9H1Y0 275 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 MS4A5Q9H3V2 200 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 PLEKHF2Q9H8W4 249 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 ELL3Q9HB65 397 aaPredicted RBP6.95□□□□□ -1.3
USP4-210ENST00000483212 GCM1Q9NP62 436 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 DYNLRB1Q9NP97 96 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 CBLN4Q9NTU7 201 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 UFSP2Q9NUQ7 469 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 C1orf123Q9NWV4 160 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 KCNK7Q9Y2U2 307 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 ROS1P08922 2347 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 HELZ2Q9BYK8 2649 aaKnown RBP6.94□□□□□ -1.3
USP4-210ENST00000483212 FAM90A10PA6NDY2 464 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 FAM90A18PA6NE21 464 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 FAM90A16PA6NEW6 464 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 FAM90A20PA6NIJ5 464 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 FAM90A8PA6NJQ4 464 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 FAM90A7PA6NKC0 464 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 A6NLC8 198 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 FAM90A22PA8MWA6 464 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 FAM90A12PA8MX19 464 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 FAM90A5PA8MXJ8 464 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 FAM90A23PA8MXZ1 464 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 TRAPPC2LH3BP13 241 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 MFNGO00587 321 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 GEMIN2O14893 280 aaKnown RBP6.94□□□□□ -1.3
USP4-210ENST00000483212 WNT9BO14905 357 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 CYB5AP00167 134 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 CSTBP04080 98 aaKnown RBP6.94□□□□□ -1.3
USP4-210ENST00000483212 MELTFP08582 738 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 FAM90A15PP0C7V4 464 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 FAM90A13PP0C7W8 464 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 FAM90A14PP0C7W9 464 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 FAM90A24PP0C7X0 464 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 PTHLHP12272 177 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 TNFSF4P23510 183 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 CPT2P23786 658 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 TALDO1P37837 337 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 PITPNBP48739 271 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 VEGFCP49767 419 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 CCL8P80075 99 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 IL18Q14116 193 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 IL13RA2Q14627 380 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 TAF9Q16594 264 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 BAK1Q16611 211 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 ZNF181Q2M3W8 571 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 PCGF3Q3KNV8 242 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 TMEM69Q5SWH9 247 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 AGAP6Q5VW22 663 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 RAB12Q6IQ22 244 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 BAIAP2L2Q6UXY1 529 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 Q8IYB0 196 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 FAM58AQ8N1B3 248 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 OR56B1Q8NGI3 324 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 OR10R2Q8NGX6 335 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 ZFAND2BQ8WV99 257 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 ST8SIA4Q92187 359 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 GCDHQ92947 438 aaPredicted RBP6.94□□□□□ -1.3
USP4-210ENST00000483212 TRIM63Q969Q1 353 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 URM1Q9BTM9 101 aaKnown RBP6.94□□□□□ -1.3
USP4-210ENST00000483212 WDR13Q9H1Z4 485 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 AUNIPQ9H7T9 357 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 FN3KRPQ9HA64 309 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.94□□□□□ -1.3
USP4-210ENST00000483212 PCDHB16Q9NRJ7 776 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 DCAF16Q9NXF7 216 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 RCC2Q9P258 522 aaKnown RBP6.94□□□□□ -1.3
USP4-210ENST00000483212 ELF5Q9UKW6 265 aaPredicted RBP6.94□□□□□ -1.3
USP4-210ENST00000483212 ST3GAL6Q9Y274 331 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 DCHS2Q6V1P9 2916 aa6.94□□□□□ -1.3
USP4-210ENST00000483212 USP9YO00507 2555 aaPredicted RBP6.94□□□□□ -1.3
USP4-210ENST00000483212 ABCA4P78363 2273 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 PKDREJQ9NTG1 2253 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 FBN2P35556 2912 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 TRAV18A0A075B6X5 111 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 METTL21EPA6NDL7 271 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 H7C417 338 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 OVOL3O00110 214 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 GSTZ1O43708 216 aaPredicted RBP6.93□□□□□ -1.3
USP4-210ENST00000483212 SCGNO76038 276 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 HPXP02790 462 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 CSF3P09919 207 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 HIST1H1DP16402 221 aaKnown RBP6.93□□□□□ -1.3
USP4-210ENST00000483212 PRKACAP17612 351 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 CHATP28329 748 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 ZNF146Q15072 292 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms