RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ANGPTL7O43827 346 aa11.46□□□□□ -0.57
UPF3A-204ENST00000475218 ALDH3A2P51648 485 aa11.46□□□□□ -0.57
UPF3A-204ENST00000475218 COL10A1Q03692 680 aa11.46□□□□□ -0.57
UPF3A-204ENST00000475218 MIDNQ504T8 468 aa11.46□□□□□ -0.57
UPF3A-204ENST00000475218 LDLRAD2Q5SZI1 272 aa11.46□□□□□ -0.57
UPF3A-204ENST00000475218 OR51A4Q8NGJ6 313 aa11.46□□□□□ -0.57
UPF3A-204ENST00000475218 PPP1R35Q8TAP8 253 aa11.46□□□□□ -0.57
UPF3A-204ENST00000475218 PIFOQ8TCI5 191 aa11.46□□□□□ -0.57
UPF3A-204ENST00000475218 SLC29A1Q99808 456 aa11.46□□□□□ -0.57
UPF3A-204ENST00000475218 ZNF649Q9BS31 505 aa11.46□□□□□ -0.57
UPF3A-204ENST00000475218 CAB39Q9Y376 341 aaPredicted RBP11.46□□□□□ -0.57
UPF3A-204ENST00000475218 TMEM82A0PJX8 343 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 TSPAN9O75954 239 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 ATP6V1E1P36543 226 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 NPBWR2P48146 333 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 BMXP51813 675 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 FUT6P51993 359 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 ASPHD2Q6ICH7 369 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 GDPGP1Q6ZNW5 385 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 SLC25A26Q70HW3 274 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 DYNAPQ8N1N2 210 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 PELI1Q96FA3 418 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 CEP19Q96LK0 163 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 FAM234AQ9H0X4 552 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 PLEKHA1Q9HB21 404 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 IMPAD1Q9NX62 359 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.46□□□□□ -0.58
UPF3A-204ENST00000475218 EXOGQ9Y2C4 368 aaKnown RBP11.46□□□□□ -0.58
UPF3A-204ENST00000475218 SF3B6Q9Y3B4 125 aaKnown RBP11.46□□□□□ -0.58
UPF3A-204ENST00000475218 NOTCH1P46531 2555 aa11.46□□□□□ -0.58
UPF3A-204ENST00000475218 C17orf98A8MV24 154 aa11.45□□□□□ -0.58
UPF3A-204ENST00000475218 H3BUX3 64 aa11.45□□□□□ -0.58
UPF3A-204ENST00000475218 SLC16A6O15403 523 aa11.45□□□□□ -0.58
UPF3A-204ENST00000475218 INMTO95050 263 aa11.45□□□□□ -0.58
UPF3A-204ENST00000475218 ISG15P05161 165 aa11.45□□□□□ -0.58
UPF3A-204ENST00000475218 UBCP0CG48 685 aaKnown RBP11.45□□□□□ -0.58
UPF3A-204ENST00000475218 PIPP12273 146 aaPredicted RBP11.45□□□□□ -0.58
UPF3A-204ENST00000475218 C17orf107Q6ZR85 190 aa11.45□□□□□ -0.58
UPF3A-204ENST00000475218 ENTHD1Q8IYW4 607 aa11.45□□□□□ -0.58
UPF3A-204ENST00000475218 CCDC54Q8NEL0 328 aa11.45□□□□□ -0.58
UPF3A-204ENST00000475218 LGALS12Q96DT0 336 aa11.45□□□□□ -0.58
UPF3A-204ENST00000475218 MEGF9Q9H1U4 602 aa11.45□□□□□ -0.58
UPF3A-204ENST00000475218 RBFOX1Q9NWB1 397 aaKnown RBP11.45□□□□□ -0.58
UPF3A-204ENST00000475218 SLC7A11Q9UPY5 501 aa11.45□□□□□ -0.58
UPF3A-204ENST00000475218 FAM90A8PA6NJQ4 464 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 OR4C45A6NMZ5 311 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 IGHA1P01876 353 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 ZNF91Q05481 1191 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 ZFP1Q6P2D0 407 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 BRICD5Q6PL45 260 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 ZNF782Q6ZMW2 699 aaPredicted RBP11.44□□□□□ -0.58
UPF3A-204ENST00000475218 LHFPL4Q7Z7J7 247 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 OR52N4Q8NGI2 321 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 PP6455Q8WZ26 134 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 FGGYQ96C11 551 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 C10orf35Q96D05 121 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 MYRFQ9Y2G1 1151 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 IGKV1-12A0A0C4DH73 117 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 DAPL1A0PJW8 107 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 PSPNO60542 156 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 GATBO75879 557 aaKnown RBP11.44□□□□□ -0.58
UPF3A-204ENST00000475218 PAHP00439 452 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 IGKV1D-12P01611 117 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 CALCBP10092 127 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 COX7A1P24310 79 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 DUSP1P28562 367 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 SLC34A1Q06495 639 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 DHRS7BQ6IAN0 325 aaPredicted RBP11.44□□□□□ -0.58
UPF3A-204ENST00000475218 SLC35E4Q6ICL7 350 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 UTS2BQ765I0 119 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 FAM220AQ7Z4H9 259 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 ACBD7Q8N6N7 88 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 ASCC1Q8N9N2 400 aaKnown RBP11.44□□□□□ -0.58
UPF3A-204ENST00000475218 DNAAF1Q8NEP3 725 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 OR5R1Q8NH85 324 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 STMN2Q93045 179 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 SSX3Q99909 188 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 PPA2Q9H2U2 334 aa11.44□□□□□ -0.58
UPF3A-204ENST00000475218 ISG20L2Q9H9L3 353 aaKnown RBP11.44□□□□□ -0.58
UPF3A-204ENST00000475218 NKX1-2Q9UD57 310 aaPredicted RBP11.44□□□□□ -0.58
UPF3A-204ENST00000475218 ODF3BA8MYP8 253 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 E9PI62 339 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 CHST1O43916 411 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 CHRM2P08172 466 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 DBTP11182 482 aaKnown RBP11.43□□□□□ -0.58
UPF3A-204ENST00000475218 ATF1P18846 271 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 BCL3P20749 454 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 TGFBR2P37173 567 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 CCR9P51686 369 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 ACTC1P68032 377 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 ACTA1P68133 377 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 TMEM244Q5VVB8 128 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 MEDAGQ5VYS4 303 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 KCTD20Q7Z5Y7 419 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 EGFL6Q8IUX8 553 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 OR8H2Q8N162 312 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 RHOXF1Q8NHV9 184 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 BORCS8Q96FH0 119 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 C4orf36Q96KX1 117 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 ADI1Q9BV57 179 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms