RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ZNF782Q6ZMW2 699 aaPredicted RBP12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 ZSCAN4Q8NAM6 433 aaPredicted RBP12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 EMG1Q92979 244 aaKnown RBP12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 RNF166Q96A37 237 aaPredicted RBP12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 C10orf35Q96D05 121 aa12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 ADAT3Q96EY9 351 aaPredicted RBP12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 MBOAT4Q96T53 435 aa12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 SSX3Q99909 188 aa12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 FAM234AQ9H0X4 552 aa12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 PPA2Q9H2U2 334 aa12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 HEXA-AS1Q9H8Q6 139 aa12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 hCG_1809904A0A1W2PP81 198 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 A0A1W2PPE2 198 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 A0A1W2PR64 198 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 A0A1W2PRV1 198 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 J3QLW9 94 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 J3QRE1 110 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 K7N7A8 449 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 SLC16A6O15403 523 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 CHRM2P08172 466 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 HTR1AP08908 422 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 ZNF19P17023 458 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 ZNF20P17024 532 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 POU3F4P49335 361 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 EDDM3BP56851 147 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 PROK1P58294 105 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 NANOS3P60323 173 aaKnown RBP12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 EGFL6Q8IUX8 553 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 C11orf42Q8N5U0 333 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 PP6455Q8WZ26 134 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 FGGYQ96C11 551 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 FRRS1LQ9P0K9 344 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 IL36RNQ9UBH0 155 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 GMPPBQ9Y5P6 360 aa12.79□□□□□ -0.36
CCDC88B-205ENST00000472524 NOTCH1P46531 2555 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 E9PQ18 207 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 CALCBP10092 127 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 TGFBR2P37173 567 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 RBP2P50120 134 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 ATP1B3P54709 279 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 SNU13P55769 128 aaKnown RBP12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 EDDM3AQ14507 147 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 LRRC75BQ2VPJ9 315 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 SLC25A30Q5SVS4 291 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 GDPD3Q7L5L3 318 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 KCTD20Q7Z5Y7 419 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 ACBD7Q8N6N7 88 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 OR10AC1Q8NH08 325 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 RFT1Q96AA3 541 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 AJUBAQ96IF1 538 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 C4orf36Q96KX1 117 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 MMP27Q9H306 513 aa12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 RBFOX1Q9NWB1 397 aaKnown RBP12.78□□□□□ -0.36
CCDC88B-205ENST00000472524 IGKV1-9A0A0C4DH69 117 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 A0A0G2JK05 382 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 SNTNA6NMZ2 147 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 M0QZ24 198 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 TIMM23O14925 209 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 ZNF737O75373 536 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 CLPXO76031 633 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 HAND1O96004 215 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 CYB5AP00167 134 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 OCM2P0CE71 109 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 OCMP0CE72 109 aaPredicted RBP12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 ATF1P18846 271 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 BCL3P20749 454 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 GABRR1P24046 479 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 AZGP1P25311 298 aaKnown RBP12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 DUSP1P28562 367 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 NPBWR2P48146 333 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 DLX6P56179 175 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 MTCP1P56278 107 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 LGALS4P56470 323 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 ACTA2P62736 377 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 ACTG2P63267 376 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 ZNF91Q05481 1191 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 ASPHD2Q6ICH7 369 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 ENTHD1Q8IYW4 607 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 OR8H2Q8N162 312 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 DNAAF1Q8NEP3 725 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 OR51A4Q8NGJ6 313 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 OR13C3Q8NGS6 347 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 LGALS12Q96DT0 336 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 PELI1Q96FA3 418 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 C9orf16Q9BUW7 83 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 CHST6Q9GZX3 395 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 MEGF9Q9H1U4 602 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 C16orf95Q9H693 158 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 TCF7L1Q9HCS4 588 aa12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 EXOGQ9Y2C4 368 aaKnown RBP12.77□□□□□ -0.37
CCDC88B-205ENST00000472524 TMEM82A0PJX8 343 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 C17orf98A8MV24 154 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 TSPAN9O75954 239 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 IGHA1P01876 353 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 ISG15P05161 165 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 ZNF728P0DKX0 622 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 DBTP11182 482 aaKnown RBP12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 PRKACAP17612 351 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 PRKACBP22694 351 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 ALKBH1Q13686 389 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms