RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 TINAGQ9UJW2 476 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 HSPB2A8KAH6 182 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 CD1AP06126 327 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 H3F3AP84243 136 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 HSPB2Q16082 182 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 RBMXL1Q96E39 390 aaKnown RBP11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 ZNF503-AS2A6NEH8 195 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 GP1BAP07359 652 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 ZNF728P0DKX0 622 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 MDP1Q86V88 176 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 OR13G1Q8NGZ3 307 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 UQCC2Q9BRT2 126 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 OR2J1Q9GZK6 312 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 SCPEP1Q9HB40 452 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 PARD6AQ9NPB6 346 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 AKAP13Q12802 2813 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 IGKV1-27A0A075B6S5 117 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 OR6C6A6NF89 314 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 TDGF1P13385 188 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 THBS4P35443 961 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 RPS27AP62979 156 aaKnown RBP11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 BEND4Q6ZU67 534 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 PDZD9Q8IXQ8 264 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 TMEM178AQ8NBL3 297 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 HAS2Q92819 552 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 KCNIP3Q9Y2W7 256 aa11.91□□□□□ -0.5
CCDC88A-211ENST00000471947 CDIPTO14735 213 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 SRSF10O75494 262 aaKnown RBP11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 PTGER4P35408 488 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 FOXO1Q12778 655 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 OR1J1Q8NGS3 322 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 PP6455Q8WZ26 134 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 WDR1O75083 606 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 NXPH2O95156 264 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 WT1P19544 449 aaPredicted RBP11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 FSTP19883 344 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 B3GALT5-AS1P59052 145 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 ZNF808Q8N4W9 903 aaPredicted RBP11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 EXTL1Q92935 676 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 TMEM14DPA8MWL7 114 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 DEFB108AA8MXU0 73 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 PDGFAP04085 211 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 PRKACBP22694 351 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 HOXA6P31267 233 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 FAM3AP98173 230 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 PPA1Q15181 289 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 CSRP2Q16527 193 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 SLC36A1Q7Z2H8 476 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 ZSCAN4Q8NAM6 433 aaPredicted RBP11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 OIT3Q8WWZ8 545 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 AQP3Q92482 292 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 PPP1R3CQ9UQK1 317 aa11.9□□□□□ -0.5
CCDC88A-211ENST00000471947 ADGRG4Q8IZF6 3080 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 ZNF816-ZNF321PA0A0X1KG74 233 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 SNRPGP15A8MWD9 76 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 GABRA2P47869 451 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 SLC25A53Q5H9E4 307 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 RFPL4BQ6ZWI9 263 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 RTN4IP1Q8WWV3 396 aaPredicted RBP11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 ACACBO00763 2458 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 IGKV1-12A0A0C4DH73 117 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 IGKV1D-12P01611 117 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 RCC1P18754 421 aaPredicted RBP11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 BMP5P22003 454 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 MED12LQ86YW9 2145 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 SLC30A7Q8NEW0 376 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 ZPBPQ9BS86 351 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 C5orf66Q9H5L9 145 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 BCO1Q9HAY6 547 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 TRAPPC2LQ9UL33 140 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 IGHV3-43A0A0B4J1X8 118 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 CD300LBA8K4G0 201 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 RGS13O14921 159 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 RHBDL1O75783 438 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 ONECUT2O95948 504 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 OR5AC1P0C628 307 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 IGHV3-43DP0DP04 118 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 ZNF83P51522 516 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 ANKRD55Q3KP44 614 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 ADPRHL1Q8NDY3 354 aa11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 MRPL24Q96A35 216 aaKnown RBP11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 NPDC1Q9NQX5 325 aaPredicted RBP11.89□□□□□ -0.51
CCDC88A-211ENST00000471947 LEUTXA8MZ59 168 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 FKBP2P26885 142 aaKnown RBP11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 PXDC1Q5TGL8 231 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 OR10C1Q96KK4 312 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 ZNF286AQ9HBT8 521 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 COL12A1Q99715 3063 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 TIMM8AO60220 97 aaPredicted RBP11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 IL5P05113 134 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 PSMB6P28072 239 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 SWI5Q1ZZU3 235 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 FAM166AQ6J272 317 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 VWA1Q6PCB0 445 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 ZDHHC23Q8IYP9 409 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 TMEM54Q969K7 222 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 CMTM3Q96MX0 182 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 SDHAF2Q9NX18 166 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 SYNGR3O43761 229 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms