RNA–Protein interactions for RNA: ENST00000469694.5

GPC1-208, Transcript of glypican 1, humanhuman

TSL 2

Gene GPC1, Length 2,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-208ENST00000469694 CTLA4P16410 223 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 LMO1P25800 156 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 CEACAM6P40199 344 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 CASP6P55212 293 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 FMODQ06828 376 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 MS4A18Q3C1V0 323 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 SLC18B1Q6NT16 456 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 NKAIN3Q8N8D7 197 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 HHLA2Q9UM44 414 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 CNOT1A5YKK6 2376 aaKnown RBP12.16□□□□□ -0.46
GPC1-208ENST00000469694 OR5H15A6NDH6 313 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 OR5H1A6NKK0 313 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 SEC11BP0C7V7 166 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 FHITP49789 147 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 RPL27P61353 136 aaKnown RBP12.16□□□□□ -0.46
GPC1-208ENST00000469694 QRFPP83859 136 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 POU3F1Q03052 451 aaPredicted RBP12.16□□□□□ -0.46
GPC1-208ENST00000469694 MYBPHQ13203 477 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 UBE2V2Q15819 145 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 VAX1Q5SQQ9 334 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 C6orf15Q6UXA7 325 aaPredicted RBP12.16□□□□□ -0.46
GPC1-208ENST00000469694 PEG10Q86TG7 708 aaKnown RBP12.16□□□□□ -0.46
GPC1-208ENST00000469694 RTN4RL2Q86UN3 420 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 TMEM156Q8N614 296 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 OR2M3Q8NG83 312 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 C5orf34Q96MH7 638 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 SOX7Q9BT81 388 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 PBDC1Q9BVG4 233 aa12.16□□□□□ -0.46
GPC1-208ENST00000469694 PRSS37A4D1T9 235 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 ZNF727A8MUV8 499 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 CXCL1P09341 107 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 CHATP28329 748 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 CAMLGP49069 296 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 ELOBQ15370 118 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 PDZD11Q5EBL8 140 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 SOHLH1Q5JUK2 328 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 RPS19BP1Q86WX3 136 aaKnown RBP12.15□□□□□ -0.46
GPC1-208ENST00000469694 LOXL4Q96JB6 756 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 STRADBQ9C0K7 418 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 C19orf12Q9NSK7 152 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 ZNF814B7Z6K7 855 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 MKRN2OSH3BPM6 223 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 RAMP1O60894 148 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 RPS2P15880 293 aaKnown RBP12.15□□□□□ -0.46
GPC1-208ENST00000469694 FPR2P25090 351 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 APOBEC1P41238 236 aaKnown RBP12.15□□□□□ -0.46
GPC1-208ENST00000469694 TLE3Q04726 772 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 SEMA6DQ8NFY4 1073 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 ZNF519Q8TB69 540 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 Q8WTZ3 238 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 SCGB3A2Q96PL1 93 aa12.15□□□□□ -0.46
GPC1-208ENST00000469694 RIF1Q5UIP0 2472 aaKnown RBP12.14□□□□□ -0.47
GPC1-208ENST00000469694 LMX1BO60663 402 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 VSIG8P0DPA2 414 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 SLC35A1P78382 337 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 FOXO1Q12778 655 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 EXT1Q16394 746 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 HIST2H3PS2Q5TEC6 136 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 KCTD18Q6PI47 426 aaPredicted RBP12.14□□□□□ -0.47
GPC1-208ENST00000469694 TMEM104Q8NE00 496 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 TXNIPQ9H3M7 391 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 ZFHX2Q9C0A1 2572 aaPredicted RBP12.14□□□□□ -0.47
GPC1-208ENST00000469694 PRRC2CQ9Y520 2896 aaKnown RBP12.14□□□□□ -0.47
GPC1-208ENST00000469694 IGKV1D-43A0A0B4J1Z2 117 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 A0A0G2JMM0 328 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 A0A1B0GW64 132 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 A0A1W2PPB8 328 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 A0A1W2PRS3 328 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 KIR3DP1A8MWS1 328 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 DEDDO75618 318 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 SCGNO76038 276 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 PTBP3O95758 552 aaKnown RBP12.14□□□□□ -0.47
GPC1-208ENST00000469694 ZNF101Q8IZC7 436 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 LRRC18Q8N456 261 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 OR10AD1Q8NGE0 317 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 PRRX2Q99811 253 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 NUDT16L1Q9BRJ7 211 aaKnown RBP12.14□□□□□ -0.47
GPC1-208ENST00000469694 MRPL37Q9BZE1 423 aaKnown RBP12.14□□□□□ -0.47
GPC1-208ENST00000469694 PTGES2Q9H7Z7 377 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 PROK2Q9HC23 129 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 MRPL22Q9NWU5 206 aaKnown RBP12.14□□□□□ -0.47
GPC1-208ENST00000469694 ANAPC10Q9UM13 185 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 LRP12Q9Y561 859 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 PCSK5Q92824 1860 aa12.14□□□□□ -0.47
GPC1-208ENST00000469694 LOC107986453A0A1B0GWG9 222 aa12.13□□□□□ -0.47
GPC1-208ENST00000469694 SYT7O43581 403 aa12.13□□□□□ -0.47
GPC1-208ENST00000469694 COX5BP10606 129 aa12.13□□□□□ -0.47
GPC1-208ENST00000469694 FABP4P15090 132 aa12.13□□□□□ -0.47
GPC1-208ENST00000469694 SSR4P51571 173 aa12.13□□□□□ -0.47
GPC1-208ENST00000469694 SUCLG1P53597 346 aaKnown RBP12.13□□□□□ -0.47
GPC1-208ENST00000469694 NKX6-1P78426 367 aaPredicted RBP12.13□□□□□ -0.47
GPC1-208ENST00000469694 ZNF343Q6P1L6 599 aa12.13□□□□□ -0.47
GPC1-208ENST00000469694 SUMF2Q8NBJ7 301 aa12.13□□□□□ -0.47
GPC1-208ENST00000469694 ERGIC1Q969X5 290 aa12.13□□□□□ -0.47
GPC1-208ENST00000469694 DDIT4LQ96D03 193 aa12.13□□□□□ -0.47
GPC1-208ENST00000469694 SUCNR1Q9BXA5 334 aa12.13□□□□□ -0.47
GPC1-208ENST00000469694 FAM86C1Q9NVL1 165 aa12.13□□□□□ -0.47
GPC1-208ENST00000469694 WASF3Q9UPY6 502 aa12.13□□□□□ -0.47
GPC1-208ENST00000469694 LIPT2A6NK58 231 aa12.13□□□□□ -0.47
GPC1-208ENST00000469694 FIGNL2A6NMB9 653 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms