RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 KITLGP21583 273 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 FKBP2P26885 142 aaKnown RBP3.46□□□□□ -1.86
HMGB1-207ENST00000468384 PSMB8P28062 276 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 PRDX6P30041 224 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 APLNRP35414 380 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 KIR2DS2P43631 304 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 GLIPR1P48060 266 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 PRRX1P54821 245 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 APOC4P55056 127 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 CLDN17P56750 224 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 ABCE1P61221 599 aaKnown RBP3.46□□□□□ -1.86
HMGB1-207ENST00000468384 RPL24P83731 157 aaKnown RBP3.46□□□□□ -1.86
HMGB1-207ENST00000468384 DLG1Q12959 904 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 ECH1Q13011 328 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 KLF9Q13886 244 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-207ENST00000468384 C18orf21Q32NC0 220 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-207ENST00000468384 OR4F3Q6IEY1 312 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 TCF24Q7RTU0 167 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 SLC35E3Q7Z769 313 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 WDR86Q86TI4 376 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 ZNF491Q8N8L2 437 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 AKR7LQ8NHP1 331 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 TMED6Q8WW62 240 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 CCL13Q99616 98 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 CCT7Q99832 543 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 ALKBH7Q9BT30 221 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-207ENST00000468384 GANQ9H2C0 597 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 VCX2Q9H322 139 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 C5orf66Q9H5L9 145 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 ACER3Q9NUN7 267 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 PAK5Q9P286 719 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 PIGLQ9Y2B2 252 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 NSG2Q9Y328 171 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 N6AMT1Q9Y5N5 214 aa3.46□□□□□ -1.86
HMGB1-207ENST00000468384 IGLV5-37A0A075B6J1 123 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 IGHV4OR15-8A0A075B7B6 117 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 A0A087WW49 117 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 A0A0U1RRA0 63 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 ODF3BA8MYP8 253 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 HACD1B0YJ81 288 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 NDUFB3O43676 98 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 GMNNO75496 209 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 VAMP5O95183 116 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 GAS8O95995 478 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 IGHG2P01859 326 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 APOHP02749 345 aaPredicted RBP3.45□□□□□ -1.86
HMGB1-207ENST00000468384 FGF4P08620 206 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 TPM1P09493 284 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 KRTAP2-3P0C7H8 128 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 IGHV1-8P0DP01 117 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 SERPINB1P30740 379 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 P2RY4P51582 365 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 ELF3P78545 371 aaPredicted RBP3.45□□□□□ -1.86
HMGB1-207ENST00000468384 KRT31Q15323 416 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 TSNQ15631 228 aaKnown RBP3.45□□□□□ -1.86
HMGB1-207ENST00000468384 AADACL4Q5VUY2 407 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 ZNF691Q5VV52 312 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 TMEM53Q6P2H8 277 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 IL34Q6ZMJ4 242 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 ZNF554Q86TJ5 538 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 FAM216BQ8N7L0 139 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 LRTM2Q8N967 370 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 OR56B1Q8NGI3 324 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 OR52B4Q8NGK2 314 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 ZNRF2Q8NHG8 242 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 TMEM234Q8WY98 164 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 P3H4Q92791 437 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 LGALS12Q96DT0 336 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 SPAG8Q99932 426 aaPredicted RBP3.45□□□□□ -1.86
HMGB1-207ENST00000468384 RARRES2Q99969 163 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 URM1Q9BTM9 101 aaKnown RBP3.45□□□□□ -1.86
HMGB1-207ENST00000468384 KRTAP2-4Q9BYR9 128 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 EVA1AQ9H8M9 152 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 CHRAC1Q9NRG0 131 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 CNOT2Q9NZN8 540 aaKnown RBP3.45□□□□□ -1.86
HMGB1-207ENST00000468384 SENP1Q9P0U3 644 aa3.45□□□□□ -1.86
HMGB1-207ENST00000468384 SERTM2A0A1B0GWG4 89 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 H3BNH8 94 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 PSMG1O95456 288 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 ZCCHC18P0CG32 403 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 CALCBP10092 127 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 CALB2P22676 271 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 LCN1P31025 176 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 FUT6P51993 359 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 ERVFC1-1P60608 527 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 CEACAM7Q14002 265 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 RCN1Q15293 331 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 SLC36A3Q495N2 470 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 LRRC10Q5BKY1 277 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 PXDC1Q5TGL8 231 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 FAM219BQ5XKK7 198 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 LPCAT4Q643R3 524 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 MED27Q6P2C8 311 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 ASCL4Q6XD76 172 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 PRUNE1Q86TP1 453 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 OR2T12Q8NG77 320 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 OR8J1Q8NGP2 316 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 OR6S1Q8NH40 331 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 GPR151Q8TDV0 419 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 DNAJA4Q8WW22 397 aaPredicted RBP3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms