RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 DHRS7CA6NNS2 312 aa18.16■□□□□ 0.5
USP4-208ENST00000464168 VDAC2P45880 294 aaPredicted RBP18.16■□□□□ 0.5
USP4-208ENST00000464168 CRISP1P54107 249 aa18.16■□□□□ 0.5
USP4-208ENST00000464168 CXCR4P61073 352 aa18.16■□□□□ 0.5
USP4-208ENST00000464168 CD83Q01151 205 aa18.16■□□□□ 0.5
USP4-208ENST00000464168 GDPD3Q7L5L3 318 aa18.16■□□□□ 0.5
USP4-208ENST00000464168 TRMT10AQ8TBZ6 339 aaKnown RBP18.16■□□□□ 0.5
USP4-208ENST00000464168 MTCH1Q9NZJ7 389 aa18.16■□□□□ 0.5
USP4-208ENST00000464168 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP18.16■□□□□ 0.5
USP4-208ENST00000464168 TMEM82A0PJX8 343 aa18.15■□□□□ 0.5
USP4-208ENST00000464168 FAM90A22PA8MWA6 464 aa18.15■□□□□ 0.5
USP4-208ENST00000464168 F2RL2O00254 374 aa18.15■□□□□ 0.5
USP4-208ENST00000464168 PRKYO43930 277 aa18.15■□□□□ 0.5
USP4-208ENST00000464168 IGLL1P15814 213 aa18.15■□□□□ 0.5
USP4-208ENST00000464168 CALB2P22676 271 aa18.15■□□□□ 0.5
USP4-208ENST00000464168 ACTA2P62736 377 aa18.15■□□□□ 0.5
USP4-208ENST00000464168 ACTG2P63267 376 aa18.15■□□□□ 0.5
USP4-208ENST00000464168 ACTC1P68032 377 aa18.15■□□□□ 0.5
USP4-208ENST00000464168 ACTA1P68133 377 aa18.15■□□□□ 0.5
USP4-208ENST00000464168 MEF2CQ06413 473 aaPredicted RBP18.15■□□□□ 0.5
USP4-208ENST00000464168 ARSJQ5FYB0 599 aaPredicted RBP18.15■□□□□ 0.5
USP4-208ENST00000464168 MEPCEQ7L2J0 689 aaKnown RBP18.15■□□□□ 0.5
USP4-208ENST00000464168 BCDIN3DQ7Z5W3 292 aaKnown RBP18.15■□□□□ 0.5
USP4-208ENST00000464168 OR8H2Q8N162 312 aa18.15■□□□□ 0.5
USP4-208ENST00000464168 OR5AU1Q8NGC0 362 aa18.15■□□□□ 0.5
USP4-208ENST00000464168 ZNF714Q96N38 554 aa18.15■□□□□ 0.5
USP4-208ENST00000464168 MRM2Q9UI43 246 aaKnown RBP18.15■□□□□ 0.5
USP4-208ENST00000464168 FAM230AA0A1W2PPH8 454 aa18.14■□□□□ 0.49
USP4-208ENST00000464168 A0A1W2PRX2 142 aa18.14■□□□□ 0.49
USP4-208ENST00000464168 HOXB6P17509 224 aaKnown RBP18.14■□□□□ 0.49
USP4-208ENST00000464168 CD33P20138 364 aa18.14■□□□□ 0.49
USP4-208ENST00000464168 ACTR3P61158 418 aa18.14■□□□□ 0.49
USP4-208ENST00000464168 SLC34A1Q06495 639 aa18.14■□□□□ 0.49
USP4-208ENST00000464168 MINOS1Q5TGZ0 78 aa18.14■□□□□ 0.49
USP4-208ENST00000464168 SLC35F2Q8IXU6 374 aa18.14■□□□□ 0.49
USP4-208ENST00000464168 SNX22Q96L94 193 aa18.14■□□□□ 0.49
USP4-208ENST00000464168 CEP19Q96LK0 163 aa18.14■□□□□ 0.49
USP4-208ENST00000464168 CADM1Q9BY67 442 aaKnown RBP18.14■□□□□ 0.49
USP4-208ENST00000464168 ADGRL4Q9HBW9 690 aa18.14■□□□□ 0.49
USP4-208ENST00000464168 SNX5Q9Y5X3 404 aa18.14■□□□□ 0.49
USP4-208ENST00000464168 MINOS1-NBL1R4GNA1 71 aa18.14■□□□□ 0.49
USP4-208ENST00000464168 DSCAML1Q8TD84 2053 aa18.13■□□□□ 0.49
USP4-208ENST00000464168 IGKV1-27A0A075B6S5 117 aa18.13■□□□□ 0.49
USP4-208ENST00000464168 ALDOBP05062 364 aa18.13■□□□□ 0.49
USP4-208ENST00000464168 CCL1P22362 96 aa18.13■□□□□ 0.49
USP4-208ENST00000464168 PTGES3Q15185 160 aaKnown RBP18.13■□□□□ 0.49
USP4-208ENST00000464168 UBE2V2Q15819 145 aa18.13■□□□□ 0.49
USP4-208ENST00000464168 SLAMF9Q96A28 289 aa18.13■□□□□ 0.49
USP4-208ENST00000464168 MNTQ99583 582 aa18.13■□□□□ 0.49
USP4-208ENST00000464168 THTPAQ9BU02 230 aa18.13■□□□□ 0.49
USP4-208ENST00000464168 PAPOLBQ9NRJ5 636 aaKnown RBP18.13■□□□□ 0.49
USP4-208ENST00000464168 SLC7A11Q9UPY5 501 aa18.13■□□□□ 0.49
USP4-208ENST00000464168 SESN1Q9Y6P5 492 aa18.13■□□□□ 0.49
USP4-208ENST00000464168 IGHV2-26A0A0B4J1V2 119 aa18.12■□□□□ 0.49
USP4-208ENST00000464168 hADV38S2A0JD32 116 aa18.12■□□□□ 0.49
USP4-208ENST00000464168 MPIG6BO95866 241 aa18.12■□□□□ 0.49
USP4-208ENST00000464168 EFNB1P98172 346 aa18.12■□□□□ 0.49
USP4-208ENST00000464168 EDDM3AQ14507 147 aa18.12■□□□□ 0.49
USP4-208ENST00000464168 TCTEX1D4Q5JR98 221 aa18.12■□□□□ 0.49
USP4-208ENST00000464168 FAHD1Q6P587 224 aa18.12■□□□□ 0.49
USP4-208ENST00000464168 TPRX1Q8N7U7 411 aa18.12■□□□□ 0.49
USP4-208ENST00000464168 NDNFQ8TB73 568 aa18.12■□□□□ 0.49
USP4-208ENST00000464168 DNAJC9Q8WXX5 260 aa18.12■□□□□ 0.49
USP4-208ENST00000464168 M0R129 80 aa18.11■□□□□ 0.49
USP4-208ENST00000464168 INMTO95050 263 aa18.11■□□□□ 0.49
USP4-208ENST00000464168 AZGP1P25311 298 aaKnown RBP18.11■□□□□ 0.49
USP4-208ENST00000464168 DAPP51397 102 aa18.11■□□□□ 0.49
USP4-208ENST00000464168 CBX1P83916 185 aa18.11■□□□□ 0.49
USP4-208ENST00000464168 AADACL4Q5VUY2 407 aa18.11■□□□□ 0.49
USP4-208ENST00000464168 EGFL6Q8IUX8 553 aa18.11■□□□□ 0.49
USP4-208ENST00000464168 ZNF676Q8N7Q3 588 aa18.11■□□□□ 0.49
USP4-208ENST00000464168 OR52N4Q8NGI2 321 aa18.11■□□□□ 0.49
USP4-208ENST00000464168 TMEM133Q9H2Q1 129 aa18.11■□□□□ 0.49
USP4-208ENST00000464168 SEBOXQ9HB31 216 aaPredicted RBP18.11■□□□□ 0.49
USP4-208ENST00000464168 CLN6Q9NWW5 311 aa18.11■□□□□ 0.49
USP4-208ENST00000464168 IL36RNQ9UBH0 155 aa18.11■□□□□ 0.49
USP4-208ENST00000464168 LINC00312Q9Y6C7 94 aa18.11■□□□□ 0.49
USP4-208ENST00000464168 ZNF670-ZNF695F2Z2N8 137 aa18.1■□□□□ 0.49
USP4-208ENST00000464168 K7EIL1 84 aa18.1■□□□□ 0.49
USP4-208ENST00000464168 FKBP6O75344 327 aa18.1■□□□□ 0.49
USP4-208ENST00000464168 RPP14O95059 124 aaKnown RBP18.1■□□□□ 0.49
USP4-208ENST00000464168 IGHA1P01876 353 aa18.1■□□□□ 0.49
USP4-208ENST00000464168 ODF4Q2M2E3 257 aa18.1■□□□□ 0.49
USP4-208ENST00000464168 SLC25A26Q70HW3 274 aa18.1■□□□□ 0.49
USP4-208ENST00000464168 SSX6Q7RTT6 188 aa18.1■□□□□ 0.49
USP4-208ENST00000464168 NRBF2Q96F24 287 aa18.1■□□□□ 0.49
USP4-208ENST00000464168 CLEC7AQ9BXN2 247 aa18.1■□□□□ 0.49
USP4-208ENST00000464168 H2AFY2Q9P0M6 372 aaPredicted RBP18.1■□□□□ 0.49
USP4-208ENST00000464168 H3BSH0 61 aa18.09■□□□□ 0.49
USP4-208ENST00000464168 MMP23AO75900 390 aa18.09■□□□□ 0.49
USP4-208ENST00000464168 DNAJC8O75937 253 aaPredicted RBP18.09■□□□□ 0.49
USP4-208ENST00000464168 HAND1O96004 215 aa18.09■□□□□ 0.49
USP4-208ENST00000464168 FUT6P51993 359 aa18.09■□□□□ 0.49
USP4-208ENST00000464168 GRK1Q15835 563 aa18.09■□□□□ 0.49
USP4-208ENST00000464168 VAX1Q5SQQ9 334 aa18.09■□□□□ 0.49
USP4-208ENST00000464168 NXNL2Q5VZ03 156 aa18.09■□□□□ 0.49
USP4-208ENST00000464168 CENPVQ7Z7K6 275 aaPredicted RBP18.09■□□□□ 0.49
USP4-208ENST00000464168 SPATA24Q86W54 205 aa18.09■□□□□ 0.49
USP4-208ENST00000464168 TCEANCQ8N8B7 351 aa18.09■□□□□ 0.49
USP4-208ENST00000464168 OR4P4Q8NGL7 312 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms