RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 OR6C6A6NF89 314 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 ZNF716A6NP11 495 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 SNAPINO95295 136 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 NFYBP25208 207 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 FOLR3P41439 243 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 RGS19P49795 217 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 SULT1A2P50226 295 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 ZNF92Q03936 586 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 ABCA11PQ4W5N1 156 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 TMEM268Q5VZI3 342 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 DHRS11Q6UWP2 260 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 AAED1Q7RTV5 226 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 BATF2Q8N1L9 274 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 ESX1Q8N693 406 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 RTN4IP1Q8WWV3 396 aaPredicted RBP10.24□□□□□ -0.77
CD44-209ENST00000433892 MLXQ9UH92 298 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 KCNIP3Q9Y2W7 256 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 AMDHD2Q9Y303 409 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 SHANK1Q9Y566 2161 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 RNASEK-C17orf49H0YIS7 233 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 NTN3O00634 580 aaPredicted RBP10.24□□□□□ -0.77
CD44-209ENST00000433892 TRAPPC6AO75865 159 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 DIRAS3O95661 229 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 MBPP02686 304 aaPredicted RBP10.24□□□□□ -0.77
CD44-209ENST00000433892 P04436 131 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 DTYMKP23919 212 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 SRD5A2P31213 254 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 ZFP36L1Q07352 338 aaKnown RBP10.24□□□□□ -0.77
CD44-209ENST00000433892 CEACAM16Q2WEN9 425 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 DHRS7BQ6IAN0 325 aaPredicted RBP10.24□□□□□ -0.77
CD44-209ENST00000433892 SLC22A25Q6T423 547 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 LHFPL2Q6ZUX7 228 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 LYZL2Q7Z4W2 148 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 OSR2Q8N2R0 312 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 CPT1CQ8TCG5 803 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 ERGIC1Q969X5 290 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 SGCZQ96LD1 299 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 FOXB1Q99853 325 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 NAA60Q9H7X0 242 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 ST3GAL6Q9Y274 331 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 PRELID3BQ9Y3B1 194 aa10.24□□□□□ -0.77
CD44-209ENST00000433892 C9JQL5 133 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 TERTO14746 1132 aaKnown RBP10.23□□□□□ -0.77
CD44-209ENST00000433892 DNPH1O43598 174 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 NDUFA2O43678 99 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 JTBO76095 146 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 F10P00742 488 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 SFTA3P0C7M3 94 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 OTX2P32243 289 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 CD80P33681 288 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 FAM3AP98173 230 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 TMEM187Q14656 261 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 WIPI1Q5MNZ9 446 aaPredicted RBP10.23□□□□□ -0.77
CD44-209ENST00000433892 OR5L1Q8NGL2 311 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 OR10D3Q8NH80 312 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 BSCL2Q96G97 398 aaPredicted RBP10.23□□□□□ -0.77
CD44-209ENST00000433892 WNT5BQ9H1J7 359 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 TIMM10BQ9Y5J6 103 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 NCKAP5O14513 1909 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 IGHV3-9P01782 118 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 Q0VFX4 171 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 PDZK1IP1Q13113 114 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 TMEM42Q69YG0 159 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 BTNL8Q6UX41 500 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 ASCL4Q6XD76 172 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 Q6ZRG5 221 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 OR11L1Q8NGX0 322 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 OR10Z1Q8NGY1 313 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 PIGCQ92535 297 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 OR2H1Q9GZK4 316 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 BCO1Q9HAY6 547 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 SLC2A9Q9NRM0 540 aa10.23□□□□□ -0.77
CD44-209ENST00000433892 XRCC2O43543 280 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 GAPDHP04406 335 aaKnown RBP10.22□□□□□ -0.77
CD44-209ENST00000433892 OR8U9P0C7N5 309 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 CLDN15P56746 228 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 PLCXD3Q63HM9 321 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 SKA3Q8IX90 412 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 OR8U1Q8NH10 309 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 ABHD3Q8WU67 409 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 KCNE4Q8WWG9 221 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 PARP11Q9NR21 331 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 hCG_38984A0A1B0GV85 526 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 LRRC3CA6NJW4 275 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 ZNF587BE7ETH6 402 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 ZNHIT1O43257 154 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 CD5P06127 495 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 TCN2P20062 427 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 FUT6P51993 359 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 F2RL1P55085 397 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 TRA2AQ13595 282 aaKnown RBP eCLIP10.22□□□□□ -0.77
CD44-209ENST00000433892 KRTAP27-1Q3LI81 207 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 CDCP2Q5VXM1 449 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 Q6ZPA2 131 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 CALHM1Q8IU99 346 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 IQCF2Q8IXL9 164 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 GALNT14Q96FL9 552 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 ZNF845Q96IR2 970 aaPredicted RBP10.22□□□□□ -0.77
CD44-209ENST00000433892 SLC7A11Q9UPY5 501 aa10.22□□□□□ -0.77
CD44-209ENST00000433892 E5RGE8 158 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms