RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 PARP14Q460N5 1801 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 A0A0U1RQV5 110 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 DUXBA0A1W2PPF3 345 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 GAGE12BA1L429 117 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 KIAA1324LA8MWY0 1029 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 PROB1E7EW31 1015 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 LIMS1P48059 325 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 METAP1P53582 386 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 PARS2Q7L3T8 475 aaKnown RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 OR4P4Q8NGL7 312 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ASB5Q8WWX0 329 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CRYGNQ8WXF5 182 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 GNRHR2Q96P88 292 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CORTO00230 105 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 SPINK8P0C7L1 97 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 PRPH2P23942 346 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 BAXQ07812 192 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ZNF770Q6IQ21 691 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 TCTN3Q6NUS6 607 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 SLC38A9Q8NBW4 561 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 KLRC4-KLRK1H3BQV0 150 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 NDUFB8O95169 186 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CLDN7O95471 211 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CBLN1P23435 193 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ANKRD55Q3KP44 614 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 SLC18B1Q6NT16 456 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ZNF547Q8IVP9 402 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 OR4F5Q8NH21 305 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 RBMXL1Q96E39 390 aaKnown RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 OR4F4Q96R69 305 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CT45A8P0DMV1 189 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CT45A9P0DMV2 189 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ELOBQ15370 118 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 GGTA1PQ4G0N0 100 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CT45A2Q5DJT8 189 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 OR52E1Q8NGJ3 308 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 TNFRSF13CQ96RJ3 184 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CTDSP1Q9GZU7 261 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 FAM57BQ71RH2 274 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 PLPP7Q8NBV4 271 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 MOB1AQ9H8S9 216 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ZNF749O43361 778 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ONECUT2O95948 504 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 DBHP09172 617 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 PPOXP50336 477 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 FUT6P51993 359 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 HGFACQ04756 655 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CCSMST1Q4G0I0 132 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 COL5A3P25940 1745 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 LILRA1O75019 489 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CALCBP10092 127 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CR2P20023 1033 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 IER3P46695 156 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 HLA-BQ31612 363 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CTSL3PQ5NE16 218 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 GKN2Q86XP6 184 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 GMPPAQ96IJ6 420 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 FAM71F1Q96KD3 344 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 C20orf144Q9BQM9 153 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 PXNP49023 591 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 PSG9Q00887 426 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 SHBQ15464 509 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 SLC25A42Q86VD7 318 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 C5AR2Q9P296 337 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ZBTB42B2RXF5 422 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 RPS15P62841 145 aaKnown RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 RING1Q06587 406 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 RNASEH2CQ8TDP1 164 aaKnown RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 BORCS8Q96FH0 119 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 LPAR4Q99677 370 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 MANBALQ9NQG1 85 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 F8VVB4 439 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 F8VWA3 439 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 SOX1O00570 391 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 TNFRSF10CO14798 259 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CTSBP07858 339 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ATP5J2P56134 94 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ELOCQ15369 112 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 TPRG1Q6ZUI0 275 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CALHM1Q8IU99 346 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 LAS2Q8IYD9 372 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 OR5AU1Q8NGC0 362 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 SLC2A8Q9NY64 477 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 NXT1Q9UKK6 140 aaKnown RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ZNF835Q9Y2P0 537 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 APODP05090 189 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 GNRHRP30968 328 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 MFGE8Q08431 387 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 TAS1R1Q7RTX1 841 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 C1QL4Q86Z23 238 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 RNF39Q9H2S5 420 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 HBE1P02100 147 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 OR2Z1Q8NG97 314 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 LMX1AQ8TE12 382 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 PARLQ9H300 379 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 PLEK2Q9NYT0 353 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 PGPEP1LA6NFU8 196 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 FCN1O00602 326 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 TMEM229BQ8NBD8 167 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 485.8 ms