RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 PGAM5Q96HS1 289 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 RHOVQ96L33 236 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 SPIN2AQ99865 258 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 SPIN2BQ9BPZ2 258 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 ST6GALNAC5Q9BVH7 336 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 SF3B5Q9BWJ5 86 aaKnown RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 METTL9Q9H1A3 318 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 KCNJ16Q9NPI9 418 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 DKKL1Q9UK85 242 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 POLR1DQ9Y2S0 133 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 IGKV1D-8A0A087WSZ0 117 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 NSG1A0A0A6YYJ2 146 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 TMEM238LA0A1B0GVL6 79 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 A0A1W2PP11 408 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 LINC00587B1AMM8 73 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 STMND1H3BQB6 276 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 RER1O15258 196 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 ZFAND5O76080 213 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 CAMLGP49069 296 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 PPT1P50897 306 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 PIGPP57054 158 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 CFHR1Q03591 330 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 RAB35Q15286 201 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 NRN1LQ496H8 165 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF506Q5JVG8 444 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF385CQ66K41 422 aaPredicted RBP4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 NANPQ8TBE9 248 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 SPTSSAQ969W0 71 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 GNPNAT1Q96EK6 184 aaPredicted RBP4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM71F1Q96KD3 344 aaPredicted RBP4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 PIGQQ9BRB3 760 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 PARD6GQ9BYG4 376 aaPredicted RBP4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 SPACA1Q9HBV2 294 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 WFDC1Q9HC57 220 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF160Q9HCG1 818 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 TREM2Q9NZC2 230 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 GSKIPQ9P0R6 139 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 ZDHHC8Q9ULC8 765 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 CYP8B1Q9UNU6 501 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 PDE4DIPQ5VU43 2346 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 CACNA1CQ13936 2221 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 SDCBPO00560 298 aaPredicted RBP4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 EREGO14944 169 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 CLN5O75503 358 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 HTR3BO95264 441 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 CD63P08962 238 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 FOLR1P15328 257 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF14P17017 642 aaPredicted RBP4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 PI3P19957 117 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 SFTPDP35247 375 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 ARL4DP49703 201 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 LBX1P52954 281 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 RPS23P62266 143 aaKnown RBP4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 FOXO1Q12778 655 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 MFAP5Q13361 173 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 SHBQ15464 509 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 SPSB3Q6PJ21 355 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 LANCL3Q6ZV70 420 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 SAXO1Q8IYX7 474 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 FBXL14Q8N1E6 418 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 GPR137CQ8N3F9 429 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 RTN4IP1Q8WWV3 396 aaPredicted RBP4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 SOX7Q9BT81 388 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 EMC6Q9BV81 110 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 SLC25A31Q9H0C2 315 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 IGFLR1Q9H665 355 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 SLC2A9Q9NRM0 540 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 PLEKHJ1Q9NW61 149 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 MYOTQ9UBF9 498 aa4.99□□□□□ -1.61
CCDC88A-203ENST00000412148 LOC102723996A0A087X1L8 192 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 E9PLN8 166 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 LINC01387J3KSC0 135 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 HBE1P02100 147 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 CST2P09228 141 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 FCGR2AP12318 317 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 PAX1P15863 534 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 AFF3P51826 1226 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 RND2P52198 227 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 PNRC1Q12796 327 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 RAB30Q15771 203 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 KHDC3LQ587J8 217 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 TMEM31Q5JXX7 168 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 ZFP82Q8N141 532 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 OR2C3Q8N628 320 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 SPACA9Q96E40 222 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 RCC1LQ96I51 464 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 IP6K3Q96PC2 410 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 SPACA5Q96QH8 159 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 LIME1Q9H400 295 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 PLEKHF2Q9H8W4 249 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF286AQ9HBT8 521 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 NIT2Q9NQR4 276 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 LYRM2Q9NU23 88 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 PARPBPQ9NWS1 579 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 RCL1Q9Y2P8 373 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 MMP24Q9Y5R2 645 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 MTCH2Q9Y6C9 303 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 A0A1W2PPH5 198 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 OR6C6A6NF89 314 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 RBFOX3A6NFN3 312 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms