RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ENDOGQ14249 297 aaKnown RBP18.25■□□□□ 0.51
CTCF-202ENST00000401394 TMEM187Q14656 261 aa18.25■□□□□ 0.51
CTCF-202ENST00000401394 SLC22A25Q6T423 547 aa18.25■□□□□ 0.51
CTCF-202ENST00000401394 UBAC2Q8NBM4 344 aa18.25■□□□□ 0.51
CTCF-202ENST00000401394 PHF1O43189 567 aaPredicted RBP18.25■□□□□ 0.51
CTCF-202ENST00000401394 PPIHO43447 177 aaKnown RBP18.25■□□□□ 0.51
CTCF-202ENST00000401394 PRF1P14222 555 aa18.25■□□□□ 0.51
CTCF-202ENST00000401394 ABCA11PQ4W5N1 156 aa18.25■□□□□ 0.51
CTCF-202ENST00000401394 ZNF468Q5VIY5 522 aaPredicted RBP18.25■□□□□ 0.51
CTCF-202ENST00000401394 NSUN5P2Q63ZY6 315 aa18.25■□□□□ 0.51
CTCF-202ENST00000401394 TSTD1Q8NFU3 115 aa18.25■□□□□ 0.51
CTCF-202ENST00000401394 TP53RKQ96S44 253 aa18.25■□□□□ 0.51
CTCF-202ENST00000401394 KCNJ16Q9NPI9 418 aa18.25■□□□□ 0.51
CTCF-202ENST00000401394 IGKV1-12A0A0C4DH73 117 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 IGKV1D-12P01611 117 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 ZNF728P0DKX0 622 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 OPN5Q6U736 354 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 C5orf46Q6UWT4 87 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 FBXW12Q6X9E4 464 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 D2HGDHQ8N465 521 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 DOCK7Q96N67 2140 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 SLC2A9Q9NRM0 540 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 P4HTMQ9NXG6 502 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 A0A1W2PNV4 684 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 LMO7DNF2Z398 122 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 CST7O76096 145 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 CCL1P22362 96 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 SLC35A1P78382 337 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 SLC25A45Q8N413 288 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 DHRS3O75911 302 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 CTSDP07339 412 aaPredicted RBP18.24■□□□□ 0.51
CTCF-202ENST00000401394 EIF5AP63241 154 aaKnown RBP18.24■□□□□ 0.51
CTCF-202ENST00000401394 C17orf82Q86X59 251 aaPredicted RBP18.24■□□□□ 0.51
CTCF-202ENST00000401394 MR1Q95460 341 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 MVB12AQ96EY5 273 aa18.24■□□□□ 0.51
CTCF-202ENST00000401394 HSPB6O14558 160 aa18.23■□□□□ 0.51
CTCF-202ENST00000401394 IGHV2-70P01814 119 aa18.23■□□□□ 0.51
CTCF-202ENST00000401394 CXCL1P09341 107 aa18.23■□□□□ 0.51
CTCF-202ENST00000401394 EPHA1P21709 976 aa18.23■□□□□ 0.51
CTCF-202ENST00000401394 MDKP21741 143 aaPredicted RBP18.23■□□□□ 0.51
CTCF-202ENST00000401394 ZNF84P51523 738 aa18.23■□□□□ 0.51
CTCF-202ENST00000401394 NDUFA6P56556 154 aa18.23■□□□□ 0.51
CTCF-202ENST00000401394 SLC35G3Q8N808 338 aa18.23■□□□□ 0.51
CTCF-202ENST00000401394 HAS2Q92819 552 aa18.23■□□□□ 0.51
CTCF-202ENST00000401394 Q96M66 194 aa18.23■□□□□ 0.51
CTCF-202ENST00000401394 ARHGAP21Q5T5U3 1957 aa18.23■□□□□ 0.51
CTCF-202ENST00000401394 H7C1Q1 480 aa18.23■□□□□ 0.51
CTCF-202ENST00000401394 GAPDHP04406 335 aaKnown RBP18.23■□□□□ 0.51
CTCF-202ENST00000401394 ZNF574Q6ZN55 896 aaPredicted RBP18.23■□□□□ 0.51
CTCF-202ENST00000401394 TMEM171Q8WVE6 324 aa18.23■□□□□ 0.51
CTCF-202ENST00000401394 RHOVQ96L33 236 aa18.23■□□□□ 0.51
CTCF-202ENST00000401394 GGACTQ9BVM4 153 aa18.23■□□□□ 0.51
CTCF-202ENST00000401394 METTL1Q9UBP6 276 aaKnown RBP18.23■□□□□ 0.51
CTCF-202ENST00000401394 NKX2-6A6NCS4 301 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 SERPINE3A8MV23 424 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 M0R135 149 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 OR2C1O95371 312 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 NTF4P34130 210 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 PYY3Q5JQD4 70 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 OR6X1Q8NH79 312 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 SLC22A8Q8TCC7 542 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 ZNF799Q96GE5 643 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 OR6C1Q96RD1 312 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 NAA60Q9H7X0 242 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 MOB1AQ9H8S9 216 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 FSCN3Q9NQT6 498 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 RSU1Q15404 277 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 SPNS3Q6ZMD2 512 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 FBXL14Q8N1E6 418 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 MYOTQ9UBF9 498 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 LIPGQ9Y5X9 500 aa18.22■□□□□ 0.51
CTCF-202ENST00000401394 NKAIN1Q4KMZ8 207 aa18.21■□□□□ 0.51
CTCF-202ENST00000401394 CXorf66Q5JRM2 361 aaPredicted RBP18.21■□□□□ 0.51
CTCF-202ENST00000401394 OR2M3Q8NG83 312 aa18.21■□□□□ 0.51
CTCF-202ENST00000401394 OR10AD1Q8NGE0 317 aa18.21■□□□□ 0.51
CTCF-202ENST00000401394 NAT6Q93015 286 aa18.21■□□□□ 0.51
CTCF-202ENST00000401394 CHST5Q9GZS9 411 aa18.21■□□□□ 0.51
CTCF-202ENST00000401394 LUZP4Q9P127 313 aa18.21■□□□□ 0.51
CTCF-202ENST00000401394 IZUMO4Q1ZYL8 232 aa18.21■□□□□ 0.51
CTCF-202ENST00000401394 MRGPRX4Q96LA9 322 aa18.21■□□□□ 0.51
CTCF-202ENST00000401394 OXGR1Q96P68 337 aa18.21■□□□□ 0.51
CTCF-202ENST00000401394 SLC35B3Q9H1N7 401 aa18.21■□□□□ 0.51
CTCF-202ENST00000401394 OR51M1Q9H341 326 aa18.21■□□□□ 0.51
CTCF-202ENST00000401394 NSG1A0A0A6YYJ2 146 aa18.21■□□□□ 0.5
CTCF-202ENST00000401394 TGIF2-C20orf24A0A0A6YYL0 155 aa18.21■□□□□ 0.5
CTCF-202ENST00000401394 E5RGE8 158 aa18.21■□□□□ 0.5
CTCF-202ENST00000401394 AP4M1O00189 453 aa18.21■□□□□ 0.5
CTCF-202ENST00000401394 S100A8P05109 93 aa18.21■□□□□ 0.5
CTCF-202ENST00000401394 P2RY1P47900 373 aa18.21■□□□□ 0.5
CTCF-202ENST00000401394 KIAA0141Q14154 515 aaPredicted RBP18.21■□□□□ 0.5
CTCF-202ENST00000401394 HNF4GQ14541 408 aa18.21■□□□□ 0.5
CTCF-202ENST00000401394 ZNF774Q6NX45 483 aa18.21■□□□□ 0.5
CTCF-202ENST00000401394 PLPP5Q8NEB5 264 aa18.21■□□□□ 0.5
CTCF-202ENST00000401394 MSI2Q96DH6 328 aaKnown RBP18.21■□□□□ 0.5
CTCF-202ENST00000401394 HS3ST6Q96QI5 342 aa18.21■□□□□ 0.5
CTCF-202ENST00000401394 CA14Q9ULX7 337 aa18.21■□□□□ 0.5
CTCF-202ENST00000401394 NSG2Q9Y328 171 aa18.21■□□□□ 0.5
CTCF-202ENST00000401394 HDGFL3Q9Y3E1 203 aa18.21■□□□□ 0.5
CTCF-202ENST00000401394 ESPL1Q14674 2120 aa18.2■□□□□ 0.5
CTCF-202ENST00000401394 IGSF23A1L1A6 192 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms