RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 PGA3P0DJD8 388 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 VDAC1P21796 283 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 MAGEA5P43359 124 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 CAMPP49913 170 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 GNG4P50150 75 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 ATP5J2P56134 94 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 GPNMBQ14956 572 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 C3AR1Q16581 482 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 FAAP20Q6NZ36 180 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 FAHD1Q6P587 224 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 SSX8Q7RTT4 187 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 PDPNQ86YL7 162 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 OR13F1Q8NGS4 319 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 CXorf58Q96LI9 332 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 P2RX4Q99571 388 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 ZNF416Q9BWM5 594 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 MMP25Q9NPA2 562 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 TINAGQ9UJW2 476 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 C5orf52A6NGY3 159 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 SLC17A2O00624 439 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 PDCD6O75340 191 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 GZMHP20718 246 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 TMEM97Q5BJF2 176 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 RBPMSQ93062 196 aaKnown RBP6.4□□□□□ -1.39
UPF2-203ENST00000397053 PTP4A1Q93096 173 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 RAB40CQ96S21 281 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 NUDT16L1Q9BRJ7 211 aaKnown RBP6.4□□□□□ -1.39
UPF2-203ENST00000397053 C20orf27Q9GZN8 174 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 ZNF665Q9H7R5 613 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 SERGEFQ9UGK8 458 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 ZNF230Q9UIE0 474 aaPredicted RBP6.4□□□□□ -1.39
UPF2-203ENST00000397053 KCNE3Q9Y6H6 103 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 A0A1B0GTQ1 180 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 SNRPGP15A8MWD9 76 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 SMLR1H3BR10 107 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 GCGP01275 180 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 AVPR2P30518 371 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 PTGFRP43088 359 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 ANKRD55Q3KP44 614 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 TMEM128Q5BJH2 165 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 SLC25A46Q96AG3 418 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 MAP6Q96JE9 813 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 DOK1Q99704 481 aa6.4□□□□□ -1.39
UPF2-203ENST00000397053 ZNF552Q9H707 407 aaPredicted RBP6.4□□□□□ -1.39
UPF2-203ENST00000397053 PATE3B3GLJ2 98 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 IGHA1P01876 353 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 IGHA2P01877 340 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 HIST1H1EP10412 219 aaKnown RBP6.39□□□□□ -1.39
UPF2-203ENST00000397053 TAGLNQ01995 201 aaKnown RBP6.39□□□□□ -1.39
UPF2-203ENST00000397053 LYG2Q86SG7 212 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 SLC25A40Q8TBP6 338 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 MCHR2Q969V1 340 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 ORAI1Q96D31 301 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 TIMP4Q99727 224 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 PRSS44E7EML9 344 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 GSTZ1O43708 216 aaPredicted RBP6.39□□□□□ -1.39
UPF2-203ENST00000397053 ICMTO60725 284 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 ZBTB37Q5TC79 503 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 OTUD1Q5VV17 481 aaPredicted RBP6.39□□□□□ -1.39
UPF2-203ENST00000397053 Q6ZNB5 142 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 MRGPREQ86SM8 312 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 LYSMD2Q8IV50 215 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 CELF2-AS1Q8N7Q2 184 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 GPR137Q96N19 417 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 SLC25A33Q9BSK2 321 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 SRD5A3Q9H8P0 318 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 C12orf10Q9HB07 376 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 SH2D2AQ9NP31 389 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 NIT2Q9NQR4 276 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 ZMAT5Q9UDW3 170 aaKnown RBP6.39□□□□□ -1.39
UPF2-203ENST00000397053 CACNG5Q9UF02 275 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 TMED3Q9Y3Q3 217 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 NKX2-2O95096 273 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 CSN3P07498 182 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 SLC6A1P30531 599 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 GAB4Q2WGN9 574 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 SPINK9Q5DT21 86 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 CMPK2Q5EBM0 449 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 DCAF10Q5QP82 559 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 C19orf48Q6RUI8 117 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 MYPOPQ86VE0 399 aaPredicted RBP6.39□□□□□ -1.39
UPF2-203ENST00000397053 DRAXINQ8NBI3 349 aaPredicted RBP6.39□□□□□ -1.39
UPF2-203ENST00000397053 FLYWCH2Q96CP2 140 aaKnown RBP6.39□□□□□ -1.39
UPF2-203ENST00000397053 PITPNC1Q9UKF7 332 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 COLQQ9Y215 455 aaPredicted RBP6.39□□□□□ -1.39
UPF2-203ENST00000397053 LIPGQ9Y5X9 500 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 CDIPTO14735 213 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 GP1BAP07359 652 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 RELBQ01201 579 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 MUC20Q8N307 709 aaPredicted RBP6.39□□□□□ -1.39
UPF2-203ENST00000397053 EIF4E3Q8N5X7 224 aaKnown RBP6.39□□□□□ -1.39
UPF2-203ENST00000397053 GATA6Q92908 595 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 OR10C1Q96KK4 312 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 HARBI1Q96MB7 349 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 PLA2G2FQ9BZM2 168 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 KCNK15Q9H427 330 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 SLC2A9Q9NRM0 540 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 C20orf141Q9NUB4 165 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 BOLA1Q9Y3E2 137 aa6.39□□□□□ -1.39
UPF2-203ENST00000397053 PPIAL4EA0A075B759 164 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms