RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 F8VVB4 439 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 F8VWA3 439 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 DENRO43583 198 aaKnown RBP17.98■□□□□ 0.47
CLN3-207ENST00000395653 FSHBP01225 129 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 SELLP14151 372 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 CAV3P56539 151 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 SCGB2A2Q13296 93 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 CRIP3Q6Q6R5 217 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 BATF2Q8N1L9 274 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 FGFRL1Q8N441 504 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 RFT1Q96AA3 541 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 SPACA5Q96QH8 159 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 OR5M11Q96RB7 305 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 SLC25A10Q9UBX3 287 aaPredicted RBP17.98■□□□□ 0.47
CLN3-207ENST00000395653 RPUSD1Q9UJJ7 312 aaKnown RBP17.98■□□□□ 0.47
CLN3-207ENST00000395653 SPRY1O43609 319 aaPredicted RBP17.98■□□□□ 0.47
CLN3-207ENST00000395653 PRDX2P32119 198 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 MED22Q15528 200 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 KISS1Q15726 138 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 SAXO1Q8IYX7 474 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 ZNF561Q8N587 486 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 CD177Q8N6Q3 437 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 OR51A2Q8NGJ7 313 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 DMRTB1Q96MA1 342 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 METRNQ9UJH8 293 aa17.98■□□□□ 0.47
CLN3-207ENST00000395653 MAGEB3O15480 346 aa17.97■□□□□ 0.47
CLN3-207ENST00000395653 PPP3R1P63098 170 aa17.97■□□□□ 0.47
CLN3-207ENST00000395653 RNF144BQ7Z419 303 aa17.97■□□□□ 0.47
CLN3-207ENST00000395653 ZSCAN4Q8NAM6 433 aaPredicted RBP17.97■□□□□ 0.47
CLN3-207ENST00000395653 ZNRF1Q8ND25 227 aa17.97■□□□□ 0.47
CLN3-207ENST00000395653 OR5D18Q8NGL1 313 aa17.97■□□□□ 0.47
CLN3-207ENST00000395653 THRSPQ92748 146 aa17.97■□□□□ 0.47
CLN3-207ENST00000395653 EMG1Q92979 244 aaKnown RBP17.97■□□□□ 0.47
CLN3-207ENST00000395653 DCTN5Q9BTE1 182 aa17.97■□□□□ 0.47
CLN3-207ENST00000395653 CCDC90BQ9GZT6 254 aa17.97■□□□□ 0.47
CLN3-207ENST00000395653 OR14J1Q9UGF5 321 aa17.97■□□□□ 0.47
CLN3-207ENST00000395653 ZNF879B4DU55 563 aa17.96■□□□□ 0.47
CLN3-207ENST00000395653 ANGPTL7O43827 346 aa17.96■□□□□ 0.47
CLN3-207ENST00000395653 GPX5O75715 221 aa17.96■□□□□ 0.47
CLN3-207ENST00000395653 INMTO95050 263 aa17.96■□□□□ 0.47
CLN3-207ENST00000395653 ALDOBP05062 364 aa17.96■□□□□ 0.47
CLN3-207ENST00000395653 NPBWR2P48146 333 aa17.96■□□□□ 0.47
CLN3-207ENST00000395653 ZP1P60852 638 aa17.96■□□□□ 0.47
CLN3-207ENST00000395653 ARMCX4Q5H9R4 360 aa17.96■□□□□ 0.47
CLN3-207ENST00000395653 FIP1L1Q6UN15 594 aaKnown RBP17.96■□□□□ 0.47
CLN3-207ENST00000395653 LY6G5BQ8NDX9 201 aa17.96■□□□□ 0.47
CLN3-207ENST00000395653 TMEM185AQ8NFB2 350 aa17.96■□□□□ 0.47
CLN3-207ENST00000395653 C8orf46Q8TAG6 207 aa17.96■□□□□ 0.47
CLN3-207ENST00000395653 UPRTQ96BW1 309 aa17.96■□□□□ 0.47
CLN3-207ENST00000395653 OR14A2Q96R54 314 aa17.96■□□□□ 0.47
CLN3-207ENST00000395653 SEBOXQ9HB31 216 aaPredicted RBP17.96■□□□□ 0.47
CLN3-207ENST00000395653 RHOFQ9HBH0 211 aa17.96■□□□□ 0.47
CLN3-207ENST00000395653 TMEM138Q9NPI0 162 aa17.96■□□□□ 0.47
CLN3-207ENST00000395653 RBFOX1Q9NWB1 397 aaKnown RBP17.96■□□□□ 0.47
CLN3-207ENST00000395653 TRBV5-7A0A0A0MS05 114 aa17.95■□□□□ 0.46
CLN3-207ENST00000395653 IGKV1-12A0A0C4DH73 117 aa17.95■□□□□ 0.46
CLN3-207ENST00000395653 KDM4BO94953 1096 aa17.95■□□□□ 0.46
CLN3-207ENST00000395653 IGKV1D-12P01611 117 aa17.95■□□□□ 0.46
CLN3-207ENST00000395653 IGFBP3P17936 291 aaPredicted RBP17.95■□□□□ 0.46
CLN3-207ENST00000395653 FSTP19883 344 aa17.95■□□□□ 0.46
CLN3-207ENST00000395653 BCL3P20749 454 aa17.95■□□□□ 0.46
CLN3-207ENST00000395653 CEBPDP49716 269 aaPredicted RBP17.95■□□□□ 0.46
CLN3-207ENST00000395653 GPR50Q13585 617 aa17.95■□□□□ 0.46
CLN3-207ENST00000395653 FAM58AQ8N1B3 248 aa17.95■□□□□ 0.46
CLN3-207ENST00000395653 MS4A15Q8N5U1 240 aa17.95■□□□□ 0.46
CLN3-207ENST00000395653 CKLFQ9UBR5 152 aa17.95■□□□□ 0.46
CLN3-207ENST00000395653 RRP9O43818 475 aaKnown RBP17.94■□□□□ 0.46
CLN3-207ENST00000395653 NDUFB7P17568 137 aa17.94■□□□□ 0.46
CLN3-207ENST00000395653 EPHA1P21709 976 aa17.94■□□□□ 0.46
CLN3-207ENST00000395653 EEF1B2P24534 225 aaKnown RBP17.94■□□□□ 0.46
CLN3-207ENST00000395653 GABARAPL2P60520 117 aa17.94■□□□□ 0.46
CLN3-207ENST00000395653 FGF12P61328 243 aa17.94■□□□□ 0.46
CLN3-207ENST00000395653 KLF17Q5JT82 389 aaPredicted RBP17.94■□□□□ 0.46
CLN3-207ENST00000395653 OR52N4Q8NGI2 321 aa17.94■□□□□ 0.46
CLN3-207ENST00000395653 H1FXQ92522 213 aaKnown RBP17.94■□□□□ 0.46
CLN3-207ENST00000395653 ORAI1Q96D31 301 aa17.94■□□□□ 0.46
CLN3-207ENST00000395653 DERL3Q96Q80 235 aa17.94■□□□□ 0.46
CLN3-207ENST00000395653 FAM234AQ9H0X4 552 aa17.94■□□□□ 0.46
CLN3-207ENST00000395653 CNTD2Q9H8S5 307 aa17.94■□□□□ 0.46
CLN3-207ENST00000395653 ISYNA1Q9NPH2 558 aa17.94■□□□□ 0.46
CLN3-207ENST00000395653 TRBV23-1A0A0A0MS06 115 aa17.93■□□□□ 0.46
CLN3-207ENST00000395653 CHRM2P08172 466 aa17.93■□□□□ 0.46
CLN3-207ENST00000395653 TMEM225BP0DP42 221 aa17.93■□□□□ 0.46
CLN3-207ENST00000395653 PRKACAP17612 351 aa17.93■□□□□ 0.46
CLN3-207ENST00000395653 MAPK3P27361 379 aaPredicted RBP17.93■□□□□ 0.46
CLN3-207ENST00000395653 BDKRB2P30411 391 aa17.93■□□□□ 0.46
CLN3-207ENST00000395653 CAPZA1P52907 286 aa17.93■□□□□ 0.46
CLN3-207ENST00000395653 ZNF146Q15072 292 aa17.93■□□□□ 0.46
CLN3-207ENST00000395653 TBCEQ15813 527 aaPredicted RBP17.93■□□□□ 0.46
CLN3-207ENST00000395653 SPIN3Q5JUX0 258 aa17.93■□□□□ 0.46
CLN3-207ENST00000395653 PXT1Q8NFP0 134 aa17.93■□□□□ 0.46
CLN3-207ENST00000395653 GPER1Q99527 375 aa17.93■□□□□ 0.46
CLN3-207ENST00000395653 HMG20AQ9NP66 347 aa17.93■□□□□ 0.46
CLN3-207ENST00000395653 NUP50Q9UKX7 468 aa17.93■□□□□ 0.46
CLN3-207ENST00000395653 GABRPO00591 440 aa17.92■□□□□ 0.46
CLN3-207ENST00000395653 SFTPBP07988 381 aa17.92■□□□□ 0.46
CLN3-207ENST00000395653 MMP9P14780 707 aa17.92■□□□□ 0.46
CLN3-207ENST00000395653 COL10A1Q03692 680 aa17.92■□□□□ 0.46
CLN3-207ENST00000395653 MLLT11Q13015 90 aaPredicted RBP17.92■□□□□ 0.46
CLN3-207ENST00000395653 DDI2Q5TDH0 399 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms