RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TMEM104Q8NE00 496 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 ZNF431Q8TF32 576 aaPredicted RBP8.74□□□□□ -1.01
VPS53-202ENST00000389040 FBXW5Q969U6 566 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 DHRS9Q9BPW9 319 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 NICN1Q9BSH3 213 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 TINAGL1Q9GZM7 467 aaPredicted RBP8.74□□□□□ -1.01
VPS53-202ENST00000389040 LPAR5Q9H1C0 372 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 CDH20Q9HBT6 801 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 MGAT4CQ9UBM8 478 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 PTPN13Q12923 2485 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 UBE2QL1A1L167 161 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 DHRS7CA6NNS2 312 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 MPIG6BO95866 241 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 PATE4P0C8F1 98 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 APOBEC3AP31941 199 aaPredicted RBP8.73□□□□□ -1.01
VPS53-202ENST00000389040 GLRXP35754 106 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 MEF2DQ14814 521 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 KISS1Q15726 138 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 UBE2V2Q15819 145 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 FAM189A2Q15884 450 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 KRTAP27-1Q3LI81 207 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 OR11H4Q8NGC9 324 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 OR52B4Q8NGK2 314 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 OR5L1Q8NGL2 311 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 GRPEL2Q8TAA5 225 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 NUDCD2Q8WVJ2 157 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 NINJ1Q92982 152 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 SGK3Q96BR1 496 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 HS3ST6Q96QI5 342 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 SLC25A21Q9BQT8 299 aaPredicted RBP8.73□□□□□ -1.01
VPS53-202ENST00000389040 TMEM59Q9BXS4 323 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 SELENOIQ9C0D9 397 aa8.73□□□□□ -1.01
VPS53-202ENST00000389040 CISD1Q9NZ45 108 aaKnown RBP8.73□□□□□ -1.01
VPS53-202ENST00000389040 A0A0A6YYD4 124 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 CRTAPO75718 401 aaPredicted RBP8.72□□□□□ -1.01
VPS53-202ENST00000389040 ZNF735P0CB33 412 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 DNASE1P24855 282 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 ALDH3B1P43353 468 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 HTR5AP47898 357 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 UCP2P55851 309 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 NKX6-1P78426 367 aaPredicted RBP8.72□□□□□ -1.01
VPS53-202ENST00000389040 BPIFB2Q8N4F0 458 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 OR4S1Q8NGB4 309 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 OR2T35Q8NGX2 323 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 NPRL2Q8WTW4 380 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 PIGTQ969N2 578 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 CST11Q9H112 138 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 POFUT1Q9H488 388 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 CA10Q9NS85 328 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 GHRLQ9UBU3 117 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 UTP20O75691 2785 aaKnown RBP8.72□□□□□ -1.01
VPS53-202ENST00000389040 C5orf49A4QMS7 147 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 DISC1C4P0D8 188 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 CELA3BP08861 270 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 GSTP1P09211 210 aaKnown RBP8.72□□□□□ -1.01
VPS53-202ENST00000389040 NAT2P11245 290 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 PTGFRP43088 359 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 SELENOVP59797 346 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 HGFACQ04756 655 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 SLC22A6Q4U2R8 563 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 DMRTC1Q5HYR2 192 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 PLAC9Q5JTB6 97 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 CRIP3Q6Q6R5 217 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 SEMA6DQ8NFY4 1073 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 OR56B1Q8NGI3 324 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 OR5D18Q8NGL1 313 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 LILRB1Q8NHL6 650 aaPredicted RBP8.72□□□□□ -1.01
VPS53-202ENST00000389040 AKR7LQ8NHP1 331 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 CCDC107Q8WV48 283 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 RAB3CQ96E17 227 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 REEP6Q96HR9 211 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 PRRT1Q99946 306 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 URM1Q9BTM9 101 aaKnown RBP8.72□□□□□ -1.01
VPS53-202ENST00000389040 CHIAQ9BZP6 476 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 ALX4Q9H161 411 aaPredicted RBP8.72□□□□□ -1.01
VPS53-202ENST00000389040 BANF2Q9H503 90 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 IFT46Q9NQC8 304 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 SLC2A8Q9NY64 477 aa8.72□□□□□ -1.01
VPS53-202ENST00000389040 LOC100509620A0A075B734 347 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 A0A1W2PP11 408 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 TMEM82A0PJX8 343 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 ATP6V1G2-DDX39BF2Z307 99 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 G3V3Q6 166 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 SOCS1O15524 211 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 SSX5O60225 188 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 LCATP04180 440 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 GIPP09681 153 aaPredicted RBP8.71□□□□□ -1.02
VPS53-202ENST00000389040 HIST1H1DP16402 221 aaKnown RBP8.71□□□□□ -1.02
VPS53-202ENST00000389040 MPZP25189 248 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 CALCRP30988 508 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 GNG2P59768 71 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 ZMYND11Q15326 602 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 EFNB3Q15768 340 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 SCGB2B2Q4G0G5 96 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 C4orf46Q504U0 113 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 RNASE10Q5GAN6 216 aaKnown RBP8.71□□□□□ -1.02
VPS53-202ENST00000389040 COLCA1Q6ZS62 124 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 RTN4RL2Q86UN3 420 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 DTX2Q86UW9 622 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 FBXL14Q8N1E6 418 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms