RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 SLC35E1Q96K37 410 aa13.33□□□□□ -0.28
NPHP4-201ENST00000378156 ZDHHC11Q9H8X9 412 aa13.33□□□□□ -0.28
NPHP4-201ENST00000378156 EP300Q09472 2414 aaPredicted RBP13.33□□□□□ -0.28
NPHP4-201ENST00000378156 CHEK1O14757 476 aa13.33□□□□□ -0.28
NPHP4-201ENST00000378156 PTP4A3O75365 173 aa13.33□□□□□ -0.28
NPHP4-201ENST00000378156 DHRS3O75911 302 aa13.33□□□□□ -0.28
NPHP4-201ENST00000378156 GPM6AP51674 278 aa13.33□□□□□ -0.28
NPHP4-201ENST00000378156 HLXQ14774 488 aaPredicted RBP13.33□□□□□ -0.28
NPHP4-201ENST00000378156 RTN4IP1Q8WWV3 396 aaPredicted RBP13.33□□□□□ -0.28
NPHP4-201ENST00000378156 TPPP3Q9BW30 176 aa13.33□□□□□ -0.28
NPHP4-201ENST00000378156 SHARPINQ9H0F6 387 aa13.33□□□□□ -0.28
NPHP4-201ENST00000378156 RAB27BO00194 218 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 IGKV1D-16P01601 117 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 RRASP10301 218 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 NAT1P18440 290 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 SKP2Q13309 424 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 GUK1Q16774 197 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.32□□□□□ -0.28
NPHP4-201ENST00000378156 SLC24A4Q8NFF2 622 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 FAM122AQ96E09 287 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 SUCNR1Q9BXA5 334 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 NARFLQ9H6Q4 476 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 ZNF355PQ9NSJ1 428 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 LIN7CQ9NUP9 197 aaKnown RBP13.32□□□□□ -0.28
NPHP4-201ENST00000378156 C21orf140B9A014 251 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 CT45A10P0DMU9 189 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 CD96P40200 585 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 GPR12P47775 334 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 HNRNPA3P51991 378 aaKnown RBP13.32□□□□□ -0.28
NPHP4-201ENST00000378156 SMIM21Q3B7S5 101 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.32□□□□□ -0.28
NPHP4-201ENST00000378156 ZNF574Q6ZN55 896 aaPredicted RBP13.32□□□□□ -0.28
NPHP4-201ENST00000378156 OR52N4Q8NGI2 321 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 TM4SF19Q96DZ7 209 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 TRAV8-7A0A075B6U6 113 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 LIPT2A6NK58 231 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 DVL1P1P54792 670 aaPredicted RBP13.32□□□□□ -0.28
NPHP4-201ENST00000378156 ZNF320A2RRD8 509 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 OR4C45A6NMZ5 311 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 SCAND1P57086 179 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 CDC20BQ86Y33 519 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 PINX1Q96BK5 328 aaKnown RBP13.32□□□□□ -0.28
NPHP4-201ENST00000378156 ZNF501Q96CX3 271 aaPredicted RBP13.32□□□□□ -0.28
NPHP4-201ENST00000378156 PRRX2Q99811 253 aa13.32□□□□□ -0.28
NPHP4-201ENST00000378156 PNLIPP16233 465 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 MEOX2P50222 304 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 LRRTM1Q86UE6 522 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 OR4D10Q8NGI6 311 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 S1PR3Q99500 378 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 ST6GALNAC2Q9UJ37 374 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 HMSDA8MTL9 139 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 GSTZ1O43708 216 aaPredicted RBP13.31□□□□□ -0.28
NPHP4-201ENST00000378156 PPP1R1AQ13522 171 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 OR2W3Q7Z3T1 314 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 C9orf40Q8IXQ3 194 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 SARGQ9BW04 601 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 WDR54Q9H977 334 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 ZNF275Q9NSD4 429 aaPredicted RBP13.31□□□□□ -0.28
NPHP4-201ENST00000378156 OR5H15A6NDH6 313 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 OR2B11Q5JQS5 317 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 C9orf62Q8N4C0 152 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 CHAC2Q8WUX2 184 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 PILRAQ9UKJ1 303 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 ADH4P08319 380 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 PIGPP57054 158 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 SNRPEP62304 92 aaKnown RBP13.31□□□□□ -0.28
NPHP4-201ENST00000378156 ZXDAP98168 799 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 PLA1AQ53H76 456 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 GVQW1Q8N7I0 195 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 VAMP8Q9BV40 100 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 CNTD2Q9H8S5 307 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 LOC285556D6RIA3 1793 aa13.31□□□□□ -0.28
NPHP4-201ENST00000378156 DVL1O14640 695 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 PTGFRP43088 359 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 RPL7L1Q6DKI1 246 aaKnown RBP13.3□□□□□ -0.28
NPHP4-201ENST00000378156 OR10D4PQ8NGN7 298 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 EXTL1Q92935 676 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 ARHGAP5-AS1Q96IT6 56 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 CLDN34H7C241 214 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 CTDSPLO15194 276 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 PATE4P0C8F1 98 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 ZNF429Q86V71 674 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 UBAC2Q8NBM4 344 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 SLC39A7Q92504 469 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 FAM103A1Q9BTL3 118 aaKnown RBP13.3□□□□□ -0.28
NPHP4-201ENST00000378156 MRPL22Q9NWU5 206 aaKnown RBP13.3□□□□□ -0.28
NPHP4-201ENST00000378156 NEUROG3Q9Y4Z2 214 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 POMT1Q9Y6A1 747 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 ZNF236Q9UL36 1845 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 HEXAP06865 529 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 CCL3P10147 92 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 ISXQ2M1V0 245 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 ZNF528Q3MIS6 628 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 EDARADDQ8WWZ3 215 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 ASB10Q8WXI3 467 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 NTNG2Q96CW9 530 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 ARL2-SNX15V9GYD0 113 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 A0A1W2PR80 420 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 AQP7P3A6NL99 342 aa13.3□□□□□ -0.28
NPHP4-201ENST00000378156 H3BMH7 237 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms