RNA–Protein interactions for RNA: ENST00000377047.8

GPC6-201, Transcript of glypican 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC6, Length 6,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-201ENST00000377047 SOX15O60248 233 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 PDCD6O75340 191 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 TSPAN7P41732 249 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 CNN1P51911 297 aaKnown RBP12.05□□□□□ -0.48
GPC6-201ENST00000377047 ZNF239Q16600 458 aaKnown RBP12.05□□□□□ -0.48
GPC6-201ENST00000377047 FAM122BQ7Z309 247 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 C9orf40Q8IXQ3 194 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 PYCARD-AS1I3L0S3 204 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 PLPP2O43688 288 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 PDGFBP01127 241 aaPredicted RBP12.05□□□□□ -0.48
GPC6-201ENST00000377047 ASB5Q8WWX0 329 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 LPAR2Q9HBW0 351 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 FLRT3Q9NZU0 649 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 COL5A3P25940 1745 aaPredicted RBP12.05□□□□□ -0.48
GPC6-201ENST00000377047 CST2P09228 141 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 SP9P0CG40 484 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 H3F3AP84243 136 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 MESP2Q0VG99 397 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 MESTQ5EB52 335 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 C1orf185Q5T7R7 199 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 ETFRF1Q6IPR1 90 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 SEBOXQ9HB31 216 aaPredicted RBP12.05□□□□□ -0.48
GPC6-201ENST00000377047 GPR35Q9HC97 309 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 DUS4LO95620 317 aaKnown RBP12.05□□□□□ -0.48
GPC6-201ENST00000377047 FBP1P09467 338 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 ZNF17P17021 662 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 TNXAQ16473 311 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 TINAGQ9UJW2 476 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 COL4A5P29400 1685 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 TRIP12Q14669 1992 aaPredicted RBP12.05□□□□□ -0.48
GPC6-201ENST00000377047 BAK1Q16611 211 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 SPNS3Q6ZMD2 512 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 LINC00299Q6ZSB3 139 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 PRDM6Q9NQX0 595 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 FKBP11Q9NYL4 201 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 LSM2Q9Y333 95 aaKnown RBP12.05□□□□□ -0.48
GPC6-201ENST00000377047 COL11A2P13942 1736 aaPredicted RBP12.05□□□□□ -0.48
GPC6-201ENST00000377047 K7ESF4 209 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 CADM3Q8N126 398 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 WDR31Q8NA23 367 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 OR4F17Q8NGA8 305 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 OR13D1Q8NGV5 346 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 TMEM171Q8WVE6 324 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 FAM122AQ96E09 287 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 PLAC1Q9HBJ0 212 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 SLC17A5Q9NRA2 495 aa12.05□□□□□ -0.48
GPC6-201ENST00000377047 DOCK5Q9H7D0 1870 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 PNPP00491 289 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 BRS3P32247 399 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 SMIM7Q9BQ49 75 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 CROCCQ5TZA2 2017 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 OR51I2Q9H344 312 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 COA4Q9NYJ1 87 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 BCL3P20749 454 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 GRAMD2BQ96HH9 432 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 GMPPAQ96IJ6 420 aaPredicted RBP12.04□□□□□ -0.48
GPC6-201ENST00000377047 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.04□□□□□ -0.48
GPC6-201ENST00000377047 C3orf85A0A1B0GTC6 90 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 OR2J3O76001 311 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 TRAPPC2P0DI81 140 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 TRAPPC2BP0DI82 140 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 LRRTM1Q86UE6 522 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 HSD17B10Q99714 261 aaKnown RBP12.04□□□□□ -0.48
GPC6-201ENST00000377047 RNF7Q9UBF6 113 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 A0A1W2PN81 502 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 NKX2-8O15522 239 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 COX6B1P14854 86 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 CHRNA7P36544 502 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 TAGLNQ01995 201 aaKnown RBP12.04□□□□□ -0.48
GPC6-201ENST00000377047 OR2H1Q9GZK4 316 aa12.04□□□□□ -0.48
GPC6-201ENST00000377047 ANKRD31Q8N7Z5 1873 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 NTN1O95631 604 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 RHOBP62745 196 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 ENDOGQ14249 297 aaKnown RBP12.03□□□□□ -0.48
GPC6-201ENST00000377047 ZNF501Q96CX3 271 aaPredicted RBP12.03□□□□□ -0.48
GPC6-201ENST00000377047 WDR89Q96FK6 387 aaPredicted RBP12.03□□□□□ -0.48
GPC6-201ENST00000377047 MED30Q96HR3 178 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 THYN1Q9P016 225 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 MASP2O00187 686 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 CDIPTO14735 213 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 HAND1O96004 215 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 NTF3P20783 257 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 Q6ZNX1 250 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 SSX7Q7RTT5 188 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 RELL2Q8NC24 303 aaPredicted RBP12.03□□□□□ -0.48
GPC6-201ENST00000377047 TMEM208Q9BTX3 173 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 HLXQ14774 488 aaPredicted RBP12.03□□□□□ -0.48
GPC6-201ENST00000377047 ZNF788Q6ZQV5 615 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 ZAR1Q86SH2 424 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 ZNF721Q8TF20 911 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 NEIL1Q96FI4 390 aaPredicted RBP12.03□□□□□ -0.48
GPC6-201ENST00000377047 FAM103A1Q9BTL3 118 aaKnown RBP12.03□□□□□ -0.48
GPC6-201ENST00000377047 FOXS1O43638 330 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 CD96P40200 585 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 LGALS7P47929 136 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 ZFP36L2P47974 494 aaKnown RBP12.03□□□□□ -0.48
GPC6-201ENST00000377047 LSM6P62312 80 aaKnown RBP12.03□□□□□ -0.48
GPC6-201ENST00000377047 TIAL1Q01085 375 aaKnown RBP eCLIP12.03□□□□□ -0.48
GPC6-201ENST00000377047 RASL11BQ9BPW5 248 aa12.03□□□□□ -0.48
GPC6-201ENST00000377047 SRRQ9GZT4 340 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms