RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ACTR3CQ9C0K3 210 aaPredicted RBP5.93□□□□□ -1.46
VPS39-202ENST00000348544 PNO1Q9NRX1 252 aaKnown RBP5.93□□□□□ -1.46
VPS39-202ENST00000348544 TBX21Q9UL17 535 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 NPIPA1Q9UND3 350 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 CYP8B1Q9UNU6 501 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 SZT2Q5T011 3432 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 A0A1B0GU03 582 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 FRG2CA6NGY1 282 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 SERPINE3A8MV23 424 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 ALG1L2C9J202 215 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 SOX15O60248 233 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 TMEM225BP0DP42 221 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 OMGP23515 440 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 DUSP1P28562 367 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 ECI1P42126 302 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 RRADP55042 308 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 RUNX1Q01196 453 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 SLC10A1Q14973 349 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 KISS1Q15726 138 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 NKAIN1Q4KMZ8 207 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 PHLDA2Q53GA4 152 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 ZNF880Q6PDB4 577 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 LIAT1Q6ZQX7 453 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 CPEB2Q7Z5Q1 589 aaKnown RBP5.92□□□□□ -1.46
VPS39-202ENST00000348544 OR5L1Q8NGL2 311 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 OR11L1Q8NGX0 322 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 SLC37A2Q8TED4 501 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 DNASE2BQ8WZ79 361 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 FAM131CQ96AQ9 280 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 GLRX2Q9NS18 164 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 ANXA10Q9UJ72 324 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 NXT1Q9UKK6 140 aaKnown RBP5.92□□□□□ -1.46
VPS39-202ENST00000348544 TRBV24-1A0A075B6N3 115 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 STMND1H3BQB6 276 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 TSPAN2O60636 221 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 PITX3O75364 302 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 ONECUT2O95948 504 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 IGKV3-11P04433 115 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 CD55P08174 381 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 ZNF728P0DKX0 622 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 CCL1P22362 96 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 CTNNB1P35222 781 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 HSD17B7P56937 341 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 HSF1Q00613 529 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 COL10A1Q03692 680 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 MFAP5Q13361 173 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 GRINAQ7Z429 371 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 D2HGDHQ8N465 521 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 OR2C3Q8N628 320 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 OR5L2Q8NGL0 311 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 OR14L1PQ8NHC6 308 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 TSLPQ969D9 159 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 MMABQ96EY8 250 aaPredicted RBP5.92□□□□□ -1.46
VPS39-202ENST00000348544 SLC46A1Q96NT5 459 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 SYT3Q9BQG1 590 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 TM2D1Q9BX74 207 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 METTL9Q9H1A3 318 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 SLC7A11Q9UPY5 501 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 B3GALT1Q9Y5Z6 326 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 MYO7BQ6PIF6 2116 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 ATG2AQ2TAZ0 1938 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 LOC102723971A0A1B0GUV8 181 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 FAM230AA0A1W2PPH8 454 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 ZNF705GA8MUZ8 300 aaPredicted RBP5.92□□□□□ -1.46
VPS39-202ENST00000348544 PROB1E7EW31 1015 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 CLDN34H7C241 214 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 IFNL4K9M1U5 179 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 ETV2O00321 342 aaPredicted RBP5.92□□□□□ -1.46
VPS39-202ENST00000348544 DDAH2O95865 285 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 OR4A8P0C604 315 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 GABRR1P24046 479 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 IL12BP29460 328 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 CDAP32320 146 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 SFTPDP35247 375 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 OPRM1P35372 400 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 ALDH3B1P43353 468 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 DAP3P51398 398 aaKnown RBP5.92□□□□□ -1.46
VPS39-202ENST00000348544 EFNA3P52797 238 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 FXYD4P59646 89 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 RPL23AP62750 156 aaKnown RBP5.92□□□□□ -1.46
VPS39-202ENST00000348544 ZP4Q12836 540 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 P2RY6Q15077 328 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 RAB35Q15286 201 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 FAM57BQ71RH2 274 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 C9orf40Q8IXQ3 194 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 TMEM123Q8N131 208 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 SLC35G3Q8N808 338 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 SUMF1Q8NBK3 374 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 SLC38A9Q8NBW4 561 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 ZNF248Q8NDW4 579 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 OR2AJ1Q8NGZ0 328 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 OR1P1Q8NH06 330 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 SNIP1Q8TAD8 396 aaKnown RBP5.92□□□□□ -1.46
VPS39-202ENST00000348544 ZNF721Q8TF20 911 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 NUDT22Q9BRQ3 303 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 TBL1XR1Q9BZK7 514 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 PNRC2Q9NPJ4 139 aaKnown RBP5.92□□□□□ -1.46
VPS39-202ENST00000348544 SLC2A9Q9NRM0 540 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 LANCL2Q9NS86 450 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 KLHL13Q9P2N7 655 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms