RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 TTC28Q96AY4 2481 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 A0A0B4J2A0 478 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 CA11O75493 328 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 CHATP28329 748 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 ARF1P84077 181 aaKnown RBP16.76■□□□□ 0.27
COL9A3-201ENST00000343916 RAB32Q13637 225 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 PDSS1Q5T2R2 415 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 RTL6Q6ICC9 239 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 CALHM1Q8IU99 346 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 TTTY12Q9BZ98 90 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 NKX6-2Q9C056 277 aaPredicted RBP16.76■□□□□ 0.27
COL9A3-201ENST00000343916 IL17BQ9UHF5 180 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 SHPKQ9UHJ6 478 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 TRBV6-7A0A0A0MS04 114 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 CDX4O14627 284 aaPredicted RBP16.75■□□□□ 0.27
COL9A3-201ENST00000343916 OR5H8P0DN80 308 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 PDZK1IP1Q13113 114 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 PPA1Q15181 289 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 OR8B8Q15620 311 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 C3AR1Q16581 482 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 PAN3Q58A45 887 aaKnown RBP16.75■□□□□ 0.27
COL9A3-201ENST00000343916 FOXRED2Q8IWF2 684 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 PIK3IP1Q96FE7 263 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 CPNE2Q96FN4 548 aaPredicted RBP16.75■□□□□ 0.27
COL9A3-201ENST00000343916 ST3GAL6Q9Y274 331 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 SHANK1Q9Y566 2161 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 ZNF503-AS2A6NEH8 195 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 ZNF850A8MQ14 1090 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 HLA-HP01893 362 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 FCGR3AP08637 254 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 AKR1C2P52895 323 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 AKR1C1Q04828 323 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 TMEM164Q5U3C3 297 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 DHRS13Q6UX07 377 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 OSR2Q8N2R0 312 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 TMEM45BQ96B21 275 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 MARS2Q96GW9 593 aaKnown RBP16.75■□□□□ 0.27
COL9A3-201ENST00000343916 RGCCQ9H4X1 137 aa16.75■□□□□ 0.27
COL9A3-201ENST00000343916 TEX13DA0A0J9YY54 714 aaPredicted RBP16.74■□□□□ 0.27
COL9A3-201ENST00000343916 TERTO14746 1132 aaKnown RBP16.74■□□□□ 0.27
COL9A3-201ENST00000343916 PPIAP62937 165 aaKnown RBP16.74■□□□□ 0.27
COL9A3-201ENST00000343916 SURF2Q15527 256 aaPredicted RBP16.74■□□□□ 0.27
COL9A3-201ENST00000343916 TOMM40LQ969M1 308 aa16.74■□□□□ 0.27
COL9A3-201ENST00000343916 PHYHIPLQ96FC7 376 aa16.74■□□□□ 0.27
COL9A3-201ENST00000343916 SAV1Q9H4B6 383 aaPredicted RBP16.74■□□□□ 0.27
COL9A3-201ENST00000343916 HSF4Q9ULV5 492 aa16.74■□□□□ 0.27
COL9A3-201ENST00000343916 SLC7A11Q9UPY5 501 aa16.74■□□□□ 0.27
COL9A3-201ENST00000343916 NDUFA2O43678 99 aa16.74■□□□□ 0.27
COL9A3-201ENST00000343916 S100A10P60903 97 aa16.74■□□□□ 0.27
COL9A3-201ENST00000343916 ASCL4Q6XD76 172 aa16.74■□□□□ 0.27
COL9A3-201ENST00000343916 OR10Z1Q8NGY1 313 aa16.74■□□□□ 0.27
COL9A3-201ENST00000343916 DNTTIP1Q9H147 329 aa16.74■□□□□ 0.27
COL9A3-201ENST00000343916 B4GALT7Q9UBV7 327 aa16.74■□□□□ 0.27
COL9A3-201ENST00000343916 ZNF391Q9UJN7 358 aa16.74■□□□□ 0.27
COL9A3-201ENST00000343916 IGKV3D-15A0A087WSY6 115 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 ZNF816-ZNF321PA0A0X1KG74 233 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 RRP8O43159 456 aaKnown RBP16.73■□□□□ 0.27
COL9A3-201ENST00000343916 IFNA2P01563 188 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 FUT6P51993 359 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 ZNF100Q8IYN0 542 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 C2orf50Q96LR7 162 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 C1QTNF5Q9BXJ0 243 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 GPR87Q9BY21 358 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 RYDENQ9NUL5 291 aaKnown RBP16.73■□□□□ 0.27
COL9A3-201ENST00000343916 CRIM1Q9NZV1 1036 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 ZNF708P17019 499 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 NPBWR2P48146 333 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 PRSS54Q6PEW0 395 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 TMEM200AQ86VY9 491 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 TMEM251Q8N6I4 163 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 ZNF611Q8N823 705 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 POC1AQ8NBT0 407 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 OR1S2Q8NGQ3 325 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 ADAMTS17Q8TE56 1095 aa16.73■□□□□ 0.27
COL9A3-201ENST00000343916 XRCC2O43543 280 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 RBMXP38159 391 aaKnown RBP16.72■□□□□ 0.27
COL9A3-201ENST00000343916 FXYD4P59646 89 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 SLC25A26Q70HW3 274 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 PRRG4Q9BZD6 226 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 CYTL1Q9NRR1 136 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 ASF1BQ9NVP2 202 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 ZNF629Q9UEG4 869 aaPredicted RBP16.72■□□□□ 0.27
COL9A3-201ENST00000343916 PCDHB10Q9UN67 800 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 EDARQ9UNE0 448 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 C5orf49A4QMS7 147 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 GPR31O00270 319 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 MT-CO3P00414 261 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 PLGLB1Q02325 96 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 RBM39Q14498 530 aaKnown RBP16.72■□□□□ 0.27
COL9A3-201ENST00000343916 Q6ZPA2 131 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 OR56B2PQ8NGI1 322 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 PAPOLGQ9BWT3 736 aaKnown RBP16.72■□□□□ 0.27
COL9A3-201ENST00000343916 PRDM14Q9GZV8 571 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 R4GN57 208 aa16.72■□□□□ 0.27
COL9A3-201ENST00000343916 C21orf140B9A014 251 aa16.71■□□□□ 0.27
COL9A3-201ENST00000343916 F8VVB4 439 aa16.71■□□□□ 0.27
COL9A3-201ENST00000343916 F8VWA3 439 aa16.71■□□□□ 0.27
COL9A3-201ENST00000343916 GLI4P10075 376 aa16.71■□□□□ 0.27
COL9A3-201ENST00000343916 PIGPP57054 158 aa16.71■□□□□ 0.27
COL9A3-201ENST00000343916 IL15RAQ13261 267 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms