RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 IQCJQ1A5X6 159 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 TMEM229BQ8NBD8 167 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 GRAMD2BQ96HH9 432 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 TMEM140Q9NV12 185 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 FAM24AA6NFZ4 105 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 RNASEK-C17orf49H0YIS7 233 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 F2RL2O00254 374 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 SP1P08047 785 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 HOXB3P14651 431 aaPredicted RBP11.24□□□□□ -0.61
SDC3-201ENST00000336798 Q6ZNB5 142 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 C1orf210Q8IVY1 113 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 OR13G1Q8NGZ3 307 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 PTPMT1Q8WUK0 201 aaPredicted RBP11.24□□□□□ -0.61
SDC3-201ENST00000336798 SEBOXQ9HB31 216 aaPredicted RBP11.24□□□□□ -0.61
SDC3-201ENST00000336798 SIRT3Q9NTG7 399 aaPredicted RBP11.24□□□□□ -0.61
SDC3-201ENST00000336798 CACNG5Q9UF02 275 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 RNPS1Q15287 305 aaKnown RBP11.24□□□□□ -0.61
SDC3-201ENST00000336798 PRDM7Q9NQW5 492 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 C3orf85A0A1B0GTC6 90 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 A0A1B0GV90 55 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 TCL1AP56279 114 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 RBPMS2Q6ZRY4 209 aaKnown RBP11.23□□□□□ -0.61
SDC3-201ENST00000336798 C19orf35Q6ZS72 473 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 OR5C1Q8NGR4 320 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 C5P01031 1676 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 IGHV3OR15-7A0A075B7D8 119 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 A0A1B0GUH1 482 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 SERPINE3A8MV23 424 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 IGHA1P01876 353 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 IGHA2P01877 340 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 FGF2P09038 288 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 GPR137Q96N19 417 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 CST2P09228 141 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 LGALS7P47929 136 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 GZMKP49863 264 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 C19orf57Q0VDD7 668 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 TMEM128Q5BJH2 165 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 LAMB4A4D0S4 1761 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 EPPINO95925 133 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 FOXJ3Q9UPW0 622 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 RGPD5Q99666 1765 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 C5orf52A6NGY3 159 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 H3BVH4 76 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 IGLV3-27P01718 113 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 ANKRD34CP0C6C1 535 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 SULT1A1P50225 295 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 ERVS71-1P61550 626 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 NAAAQ02083 359 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 BHLHA15Q7RTS1 189 aaPredicted RBP11.23□□□□□ -0.61
SDC3-201ENST00000336798 C4orf45Q96LM5 186 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 BCL2L10Q9HD36 194 aa11.23□□□□□ -0.61
SDC3-201ENST00000336798 ZNF737O75373 536 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 CD3EP07766 207 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 PNLIPRP3Q17RR3 467 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 OR52L2PQ8NGH6 319 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 OR8D4Q8NGM9 314 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 TSPAN32Q96QS1 320 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 SRD5A3Q9H8P0 318 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 LIPGQ9Y5X9 500 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 RHBDL1O75783 438 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 NTN1O95631 604 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 C11orf87Q6NUJ2 197 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 CT55Q8WUE5 264 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 SLC6A13Q9NSD5 602 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 FCN1O00602 326 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 HSD17B13Q7Z5P4 300 aaPredicted RBP11.22□□□□□ -0.61
SDC3-201ENST00000336798 IL22RA2Q969J5 263 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 CXorf58Q96LI9 332 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 PTGFRP43088 359 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 MRPL58Q14197 206 aaKnown RBP11.22□□□□□ -0.61
SDC3-201ENST00000336798 RPEL1Q2QD12 228 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 TMEM92Q6UXU6 159 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 NRTNQ99748 197 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 RABAC1Q9UI14 185 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 AMMECR1Q9Y4X0 333 aaPredicted RBP11.22□□□□□ -0.61
SDC3-201ENST00000336798 MMP24Q9Y5R2 645 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 IL9P15248 144 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 FOXO1Q12778 655 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 PWWP2BQ6NUJ5 590 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 RIMKLAQ8IXN7 391 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 LHFPL5Q8TAF8 219 aa11.22□□□□□ -0.61
SDC3-201ENST00000336798 COL16A1Q07092 1604 aaPredicted RBP11.22□□□□□ -0.61
SDC3-201ENST00000336798 CTSVO60911 334 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 CCKARP32238 428 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 SUMO3P55854 103 aaPredicted RBP11.21□□□□□ -0.61
SDC3-201ENST00000336798 ACVR1Q04771 509 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 FUT7Q11130 342 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 TP53I13Q8NBR0 393 aaPredicted RBP11.21□□□□□ -0.61
SDC3-201ENST00000336798 DYNLRB2Q8TF09 96 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 PP6455Q8WZ26 134 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 NPAS1Q99742 590 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 RASL11BQ9BPW5 248 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 NUP98P52948 1817 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 LILRA5A6NI73 299 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 ZNHIT1O43257 154 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 PRSS1P07477 247 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 OR5AC1P0C628 307 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 PKIAP61925 76 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 PMS2P11Q13670 270 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 SSPNQ14714 243 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms