RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ECDO95905 644 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 PRB1P04280 392 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 OR4A8P0C604 315 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 BCL3P20749 454 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 CHATP28329 748 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 GDNFP39905 211 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 NPBWR2P48146 333 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 AP3S2P59780 193 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 KLF9Q13886 244 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 CDNFQ49AH0 187 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 SIGIRRQ6IA17 410 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 VHLLQ6RSH7 139 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 Q6ZTK2 550 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 OR10Z1Q8NGY1 313 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 SEH1LQ96EE3 360 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 ELMOD3Q96FG2 381 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 TAS2R8Q9NYW2 309 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 KCNK7Q9Y2U2 307 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 ANKRD20A5PA0PJZ0 165 aa12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 MEIOCA2RUB1 952 aa12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 ORC5O43913 435 aa12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 GLAP06280 429 aa12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 CD3GP09693 182 aa12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 APOBEC3AP31941 199 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 SERPINF1P36955 418 aa12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 ZNF81P51508 661 aa12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 ACTBP60709 375 aa12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 ACTG1P63261 375 aa12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 POC5Q8NA72 575 aa12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 GCDHQ92947 438 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 ERGIC1Q969X5 290 aa12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 ARHGAP5-AS1Q96IT6 56 aa12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 MEGF10Q96KG7 1140 aa12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 SEBOXQ9HB31 216 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 RBFOX1Q9NWB1 397 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 IL19Q9UHD0 177 aa12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 ST3GAL6Q9Y274 331 aa12.64□□□□□ -0.39
CCDC88C-202ENST00000334448 TMEM235A6NFC5 223 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 B9A039 149 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 F8VVB4 439 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 F8VWA3 439 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 CDIPTO14735 213 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 GEMIN2O14893 280 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 PDCD6O75340 191 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 RHBDL1O75783 438 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 GSTT2BP0CG30 244 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 BLVRBP30043 206 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 KIR2DL3P43628 341 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 SRP9P49458 86 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 TAF9Q16594 264 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 NKPD1Q17RQ9 610 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 PIGYQ3MUY2 71 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 ZNF672Q499Z4 452 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 FAM209AQ5JX71 171 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 WDR82Q6UXN9 313 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 Q6ZNX1 250 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 DCDC5Q6ZRR9 648 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 FAM58AQ8N1B3 248 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 TOMM5Q8N4H5 51 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 CHST4Q8NCG5 386 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 OR2Z1Q8NG97 314 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 LILRB1Q8NHL6 650 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 Q8TCH9 128 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 GTF3AQ92664 365 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 DHRS9Q9BPW9 319 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 PECRQ9BY49 303 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 C11orf54Q9H0W9 315 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 SPACA1Q9HBV2 294 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 POU2F3Q9UKI9 436 aa12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 KLF2Q9Y5W3 355 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-202ENST00000334448 UBR5O95071 2799 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 C17orf100A8MU93 164 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 VGLL3A8MV65 326 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 LYRM1O43325 122 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 SSX5O60225 188 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 RBBP9O75884 186 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 IGHV1-46P01743 117 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 CSF1P09603 554 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 PTHLHP12272 177 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 GNB3P16520 340 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 NAT1P18440 290 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 FUT3P21217 361 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 TNFSF4P23510 183 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 RCVRNP35243 200 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 CBX5P45973 191 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 RFX2P48378 723 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 INPP1P49441 399 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 SNTB1Q13884 538 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 ZNF146Q15072 292 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 SPIN3Q5JUX0 258 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 OLFML2AQ68BL7 652 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 GDPD3Q7L5L3 318 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 FAM90A1Q86YD7 464 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 CENPSQ8N2Z9 138 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 HS3ST6Q96QI5 342 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 RASL12Q9NYN1 266 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 KLK11Q9UBX7 282 aa12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 FBXO9Q9UK97 447 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 HEATR1Q9H583 2144 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-202ENST00000334448 HCFC1P51610 2035 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 361.9 ms